Gene omics information

Query gene ID PtpAffx.223111.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6388.1PtpAffx.223111.1.S1_atpmrna40937hypothetical protein-7e-10At5g60980nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinS.X.H.G.
0.8397.0Ptp.1854.2.S1_s_atCK103624hypothetical protein-3e-1At1g64290F-box protein-relatedS.X.H.G.
0.5582.2Ptp.1854.1.S1_s_atCK093573hypothetical protein-7e-4At5g03610GDSL-motif lipase/hydrolase family proteinS.X.H.G.
0.5380.5PtpAffx.141473.1.S1_s_atCN549565hypothetical protein-4e-10At1g31910GHMP kinase family proteinS.X.H.G.
0.2950.5PtpAffx.265.2.A1_s_atCV251514hypothetical protein-6e-52At2g47060serine/threonine protein kinase, putativeS.X.H.G.
0.2747.1PtpAffx.125423.1.S1_atDN488411hypothetical protein-1e-75At1g09270IMPA-4 (IMPORTIN ALPHA ISOFORM 4)S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.097.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
5.897.4GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
5.797.3GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
5.597.1GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
4.395.8GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
4.195.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
3.794.7GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.694.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.494.0GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
3.494.0GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.052e-138PtpAffx.94095.1.S1_atCA932764hypothetical protein-1e+0At5g60980nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.022e-138PtpAffx.221750.1.S1_atpmrna38794hypothetical protein-1e-156Atmg00980-C.G.S.X.
0.012e-138PtpAffx.212446.1.S1_atpmrna24384nbs-lrr resistance protein-3e-1At5g22720F-box family proteinC.G.S.X.
0.032e-138PtpAffx.200773.1.S1_atpmrna1497hypothetical protein-1e+0At1g51090heavy-metal-associated domain-containing proteinC.G.S.X.
0.022e-138PtpAffx.200239.1.S1_atpmrna462hypothetical protein-3e-1At5g26070hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.018e-136PtpAffx.50700.1.S1_s_atCV261248hypothetical protein-1e-2At2g41900zinc finger (CCCH-type) family proteinC.G.S.X.
0.028e-136PtpAffx.43118.3.A1_atCV253351nbs-lrr resistance protein /// nbs-lrr resistance protein /// hypothetical protein /// hypothetical protein /// tir-nbs-lrr resistance protein /// hypothetical protein-2e-2At1g17020SRG1 (SENESCENCE-RELATED GENE 1)C.G.S.X.
0.048e-136PtpAffx.39724.1.S1_atCF231708hypothetical protein-3e-5At5g46780VQ motif-containing proteinC.G.S.X.
0.028e-136PtpAffx.23558.1.S1_atCV283599hypothetical protein-7e-1At1g71740unknown proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.117e-1065Arabidopsis thalianaAt5g60980836219nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;BMPOFVA---C.G.S.X.
0.333e-40167Glycine maxGmaAffx.82438.1.S1_atBI469408--2e-11At5g60980nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.031e+034Hordeum vulgareHVSMEf0012L17f_atHVSMEf0012L17f--2e-1At3g23727SCRL12 (SCR-Like 12)C.G.S.X.
0.025e+034Oryza sativaOs07g01406009635.m00407--2e+0At1g11840ATGLX1 (GLYOXALASE I HOMOLOG)C.G.S.X.
0.032e+034Triticum aestivumTaAffx.27015.1.S1_atCA682291--3e+0At4g19830immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinC.G.S.X.
0.021e-240Vitis vinifera1614694_atCF209205hypothetical protein LOC100253296-2e+0At5g02620ankyrin repeat family proteinC.G.S.X.
0.037e-548Zea maysZm.12741.1.S1_atCA403239RNA-binding protein-like-3e-1At5g43960nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage