Gene omics information

Query gene ID	PtpAffx.223111.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	PtpAffx.223111.1.S1_at	pmrna40937	hypothetical protein	-	7e-10	At5g60980	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	Ptp.1854.2.S1_s_at	CK103624	hypothetical protein	-	3e-1	At1g64290	F-box protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.1854.1.S1_s_at	CK093573	hypothetical protein	-	7e-4	At5g03610	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.141473.1.S1_s_at	CN549565	hypothetical protein	-	4e-10	At1g31910	GHMP kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.265.2.A1_s_at	CV251514	hypothetical protein	-	6e-52	At2g47060	serine/threonine protein kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.125423.1.S1_at	DN488411	hypothetical protein	-	1e-75	At1g09270	IMPA-4 (IMPORTIN ALPHA ISOFORM 4)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	97.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.7	97.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-1	38	PtpAffx.94095.1.S1_at	CA932764	hypothetical protein	-	1e+0	At5g60980	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.221750.1.S1_at	pmrna38794	hypothetical protein	-	1e-156	Atmg00980	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.212446.1.S1_at	pmrna24384	nbs-lrr resistance protein	-	3e-1	At5g22720	F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-1	38	PtpAffx.200773.1.S1_at	pmrna1497	hypothetical protein	-	1e+0	At1g51090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.200239.1.S1_at	pmrna462	hypothetical protein	-	3e-1	At5g26070	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.50700.1.S1_s_at	CV261248	hypothetical protein	-	1e-2	At2g41900	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.43118.3.A1_at	CV253351	nbs-lrr resistance protein /// nbs-lrr resistance protein /// hypothetical protein /// hypothetical protein /// tir-nbs-lrr resistance protein /// hypothetical protein	-	2e-2	At1g17020	SRG1 (SENESCENCE-RELATED GENE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e-1	36	PtpAffx.39724.1.S1_at	CF231708	hypothetical protein	-	3e-5	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.23558.1.S1_at	CV283599	hypothetical protein	-	7e-1	At1g71740	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	7e-10	65	Arabidopsis thaliana	At5g60980	836219	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;BMPOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	3e-40	167	Glycine max	GmaAffx.82438.1.S1_at	BI469408	-	-	2e-11	At5g60980	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	1e+0	34	Hordeum vulgare	HVSMEf0012L17f_at	HVSMEf0012L17f	-	-	2e-1	At3g23727	SCRL12 (SCR-Like 12)	C.G.	S.X.	Please select
0.02	5e+0	34	Oryza sativa	Os07g0140600	9635.m00407	-	-	2e+0	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.27015.1.S1_at	CA682291	-	-	3e+0	At4g19830	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	C.G.	S.X.	Please select
0.02	1e-2	40	Vitis vinifera	1614694_at	CF209205	hypothetical protein LOC100253296	-	2e+0	At5g02620	ankyrin repeat family protein	C.G.	S.X.	Please select
0.03	7e-5	48	Zea mays	Zm.12741.1.S1_at	CA403239	RNA-binding protein-like	-	3e-1	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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