CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.223043.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.223043.1.S1_at pmrna40832 - - 2e-4 At1g32970 subtilase family protein S.X. H.G.
0.50 78.6 PtpAffx.211107.1.S1_x_at pmrna21820 hypothetical protein - 2e+0 At2g31620 receptor-like protein kinase-related S.X. H.G.
0.33 57.5 PtpAffx.5285.1.A1_s_at CV254744 hypothetical protein - 1e+0 At1g55670 PSAG (PHOTOSYSTEM I SUBUNIT G) S.X. H.G.
0.33 57.5 Ptp.457.2.S1_at CK089199 hypothetical protein - 8e-1 At3g59360 UTR6 (UDP-GALACTOSE TRANSPORTER 6) S.X. H.G.
0.15 25.3 PtpAffx.218039.1.S1_at pmrna33551 hypothetical protein - 1e-8 At2g37680 - S.X. H.G.
0.06 9.8 PtpAffx.213729.1.S1_at pmrna26794 hypothetical protein - 5e+0 At4g29033 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.9 99.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3 93.7 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1 88.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 1e-21 105 PtpAffx.150591.1.S1_at CK107057 hypothetical protein - 1e+0 At5g01570 unknown protein C.G. S.X.
0.01 1e-3 46 PtpAffx.224739.1.S1_at pmrna43556 hypothetical protein - 1e-15 At5g45650 subtilase family protein C.G. S.X.
0.02 4e-3 44 PtpAffx.204248.1.S1_at pmrna8355 hypothetical protein - 2e-2 At1g20150 subtilase family protein C.G. S.X.
0.01 2e-2 42 PtpAffx.58457.1.S1_at CK104855 GRAS family transcription factor - 6e-5 At2g37650 scarecrow-like transcription factor 9 (SCL9) C.G. S.X.
0.01 2e-2 42 PtpAffx.58457.1.S1_s_at CK104855 GRAS family transcription factor - 6e-5 At2g37650 scarecrow-like transcription factor 9 (SCL9) C.G. S.X.
0.02 2e-2 42 PtpAffx.224221.1.S1_at pmrna42571 hypothetical protein - 1e-3 At2g04160 AIR3 C.G. S.X.
0.05 2e-2 42 PtpAffx.210124.1.S1_at pmrna19948 - - 5e-2 At4g10520 subtilase family protein C.G. S.X.
0.01 2e-2 42 PtpAffx.207712.1.S1_at pmrna15322 GRAS family transcription factor - 9e-5 At2g37650 scarecrow-like transcription factor 9 (SCL9) C.G. S.X.
0.01 7e-2 40 PtpAffx.206123.1.S1_at pmrna12142 hypothetical protein - 5e-25 At2g41830 cyclin-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-4 48 Arabidopsis thaliana At1g32970 840191 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOAFM - - - C.G. S.X.
0.03 2e-2 42 Glycine max Gma.8457.1.S1_at AY033772.1 subtilisin-type protease precursor - 8e-5 At1g20160 ATSBT5.2 C.G. S.X.
0.02 1e+0 34 Hordeum vulgare rbags22o03_at rbags22o03 - - 1e+0 At4g38850 SAUR15 (SMALL AUXIN UPREGULATED 15) C.G. S.X.
0.05 2e-2 42 Oryza sativa Os01g0795400 AK101715.1 - Subtilase 4e-4 At2g19170 SLP3 C.G. S.X.
0.04 8e-1 36 Triticum aestivum TaAffx.5095.1.S1_at CA723107 - - 8e-1 At1g54950 unknown protein C.G. S.X.
0.02 4e-3 42 Vitis vinifera 1620551_s_at CB339855 hypothetical protein LOC100266698 - 4e+0 At5g23212 - C.G. S.X.
0.01 1e+0 34 Zea mays Zm.4820.1.A1_a_at BG319643 hypothetical protein LOC100192684 - 1e-35 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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