CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.22300.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.22300.1.S1_at CF228629 hypothetical protein - 5e-7 At5g19740 peptidase M28 family protein S.X. H.G.
0.83 97.0 Ptp.559.1.S1_at CV227910 hypothetical protein - 4e+0 At2g35090 unknown protein S.X. H.G.
0.61 87.0 Ptp.6070.1.S1_at CK112039 hypothetical protein - 1e+0 At2g48120 PAC (PALE CRESS) S.X. H.G.
0.40 67.0 Ptp.954.1.S1_at CK089711 hypothetical protein - 6e-19 At2g21230 bZIP family transcription factor S.X. H.G.
0.40 67.0 Ptp.4388.1.S1_at BI126336 hypothetical protein - 4e-44 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) S.X. H.G.
0.36 61.6 Ptp.8084.1.A1_at CV264291 cc-nbs-lrr resistance protein - 4e-1 At2g41200 unknown protein S.X. H.G.
0.18 30.8 PtpAffx.1403.2.S1_at CX660430 hypothetical protein - 3e-9 At1g23260 MMZ1 (MMS ZWEI HOMOLOGUE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.5 99.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.4 98.6 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.9 98.4 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 7e-1 36 PtpAffx.223064.1.S1_x_at pmrna40861 hypothetical protein - 8e-2 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.01 7e-1 36 PtpAffx.220469.1.S1_x_at pmrna36862 hypothetical protein - 8e-1 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
0.01 7e-1 36 PtpAffx.210333.1.S1_at pmrna20324 hypothetical protein - 6e-1 At2g31035 - C.G. S.X.
0.01 7e-1 36 PtpAffx.210320.1.S1_at pmrna20310 hypothetical protein - 4e-1 At3g54780 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 7e-1 36 PtpAffx.202635.1.S1_at pmrna5270 hypothetical protein - 1e-56 At3g26720 glycosyl hydrolase family 38 protein C.G. S.X.
0.01 7e-1 36 PtpAffx.202635.1.S1_s_at pmrna5270 hypothetical protein - 1e-56 At3g26720 glycosyl hydrolase family 38 protein C.G. S.X.
0.01 3e+0 34 PtpAffx.36933.1.S1_at CV278579 hypothetical protein - 7e-14 At5g63640 VHS domain-containing protein / GAT domain-containing protein C.G. S.X.
0.02 3e+0 34 PtpAffx.2772.2.S1_at BU824620 hypothetical protein - 1e-29 At5g23090 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) C.G. S.X.
0.02 3e+0 34 PtpAffx.224404.1.S1_at pmrna42900 hypothetical protein - 3e-44 At5g38560 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 5e-7 56 Arabidopsis thaliana At5g19740 832094 peptidase M28 family protein F:dipeptidase activity;P:proteolysis;C:vacuole;BOMFPA - - - C.G. S.X.
0.08 7e-4 46 Glycine max GmaAffx.48644.1.S1_at AW620338 - - 9e-13 At5g19740 peptidase M28 family protein C.G. S.X.
0.09 1e-3 44 Hordeum vulgare Contig10185_at Contig10185 - - 8e-1 At3g54720 AMP1 (ALTERED MERISTEM PROGRAM 1) C.G. S.X.
0.10 1e-3 46 Oryza sativa Os01g0743300 AK069026.1 - Protease-associated PA domain containing protein 2e-2 At3g54720 AMP1 (ALTERED MERISTEM PROGRAM 1) C.G. S.X.
0.10 2e-6 54 Triticum aestivum Ta.27238.1.S1_at BT009569.1 - - 3e-8 At5g19740 peptidase M28 family protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1621339_at CF514970 hypothetical protein LOC100253988 - 4e-4 At1g53090 SPA4 (SPA1-RELATED 4) C.G. S.X.
0.05 2e-1 36 Zea mays Zm.15390.1.A1_at BM267333 hypothetical protein LOC100280068 - 4e-7 At5g19740 peptidase M28 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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