Gene omics information

Query gene ID	PtpAffx.222997.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	73.7	PtpAffx.222997.1.S1_at	pmrna40765	-	-	2e-102	Atmg00060	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.61490.1.A1_at	BP931531	-	-	3e-139	Atmg00060	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.1461.1.S1_at	CK111737	-	-	2e-7	At2g18020	EMB2296 (embryo defective 2296)	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.5626.1.A1_at	CV261500	hypothetical protein	-	4e-17	At1g22070	TGA3	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.117017.1.S1_at	CF119947	hypothetical protein	-	2e-14	At4g32250	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.47122.1.S1_a_at	CV280872	hypothetical protein	-	9e-3	At5g41350	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	Ptp.7984.1.S1_s_at	DN502965	hypothetical protein	-	1e-6	At5g35410	SOS2 (SALT OVERLY SENSITIVE 2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.1	98.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.3	97.7	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.1	97.6	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.3	96.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.6	96.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-3	42	PtpAffx.61490.1.A1_at	BP931531	-	-	3e-139	Atmg00060	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	36	PtpAffx.207103.1.S1_at	pmrna14080	hypothetical protein	-	3e-66	At5g10290	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	36	PtpAffx.207103.1.S1_x_at	pmrna14080	hypothetical protein	-	3e-66	At5g10290	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	36	PtpAffx.161240.1.S1_s_at	CX659873	hypothetical protein	-	3e-46	At5g10290	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	6e-1	34	PtpAffx.63015.1.A1_at	CV257634	hypothetical protein	-	9e-2	At1g18760	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	34	Ptp.3277.1.S1_at	DN498720	hypothetical protein	-	1e-2	At4g39830	L-ascorbate oxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	34	Ptp.3277.1.S1_s_at	DN498720	hypothetical protein	-	1e-2	At4g39830	L-ascorbate oxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	32	PtpAffx.221286.1.S1_at	pmrna38063	hypothetical protein	-	1e-7	At1g34355	forkhead-associated domain-containing protein / FHA domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	32	PtpAffx.219703.1.S1_at	pmrna35689	hypothetical protein	-	2e-3	At1g19115	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	2e-102	371	Arabidopsis thaliana	Atmg00060	-	-	Mitochondrial NADH dehydrogenase subunit 5. The gene is trans-spliced from the three different pre-cursors, NAD5a, NAD5b and NAD5c.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	6e-1	34	Glycine max	GmaAffx.85555.1.S1_at	AW317264	-	-	9e-1	At2g36295	unknown protein	C.G.	S.X.	Please select
0.07	1e+1	28	Hordeum vulgare	HVSMEl0006C17r2_x_at	HVSMEl0006C17r2	-	-	1e+0	At4g32090	galactosyltransferase	C.G.	S.X.	Please select
0.19	2e-94	345	Oryza sativa	OsAffx.32342.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-1	34	Triticum aestivum	TaAffx.112187.1.S1_at	CA626251	-	-	1e+0	Atmg00060	-	C.G.	S.X.	Please select
0.09	2e+0	30	Vitis vinifera	1614950_at	CB341496	-	-	2e+1	At3g14280	unknown protein	C.G.	S.X.	Please select
0.04	7e-1	32	Zea mays	Zm.16346.1.A1_at	AY108153.1	hypothetical protein LOC100191168 /// 40S ribosomal protein S30	-	2e-8	At4g29390	40S ribosomal protein S30 (RPS30B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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