CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.222861.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.38 63.7 PtpAffx.222861.1.S1_at pmrna40552 hypothetical protein - 1e+0 At3g47020 F-box family protein S.X. H.G.
0.15 25.3 PtpAffx.212474.1.S1_at pmrna24438 - - 1e-1 At4g30670 unknown protein S.X. H.G.
0.14 23.5 PtpAffx.206321.1.S1_at pmrna12547 hypothetical protein - 2e-2 At3g06000 leucine-rich repeat family protein S.X. H.G.
0.09 14.6 PtpAffx.223229.1.S1_at pmrna41110 hypothetical protein - 1e+0 At1g23810 paired amphipathic helix repeat-containing protein S.X. H.G.
0.07 11.6 PtpAffx.218422.1.S1_at pmrna34029 hypothetical protein - 7e-8 At5g67060 HEC1 (HECATE 1) S.X. H.G.
0.05 8.3 PtpAffx.217656.1.S1_at pmrna33008 hypothetical protein - 1e+1 At3g16700 fumarylacetoacetate hydrolase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.7 99.6 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.6 98.3 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.5 97.8 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.3 97.7 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0 95.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 3e-91 333 PtpAffx.222861.1.S1_x_at pmrna40552 hypothetical protein - 1e+0 At3g47020 F-box family protein C.G. S.X.
0.55 8e-55 212 PtpAffx.217472.1.S1_at pmrna32751 hypothetical protein - 7e-1 At1g08570 ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4) C.G. S.X.
0.09 8e-15 79 PtpAffx.112170.1.S1_at AJ768529 hypothetical protein - 4e-30 At1g17050 SPS2 (Solanesyl diphosphate synthase 2) C.G. S.X.
0.13 1e-10 65 PtpAffx.145426.1.S1_at BU811944 hypothetical protein - 1e+0 At5g12020 HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) C.G. S.X.
0.03 4e-1 34 Ptp.2345.1.S1_at BI128997 hypothetical protein - 8e-12 At2g38710 AMMECR1 family C.G. S.X.
0.02 2e+0 32 PtpAffx.223259.1.S1_at pmrna41163 hypothetical protein - 1e-8 At1g33980 Smg-4/UPF3 family protein C.G. S.X.
0.02 2e+0 32 PtpAffx.221726.1.S1_at pmrna38760 hypothetical protein - 3e+0 At5g65740 protein binding / zinc ion binding C.G. S.X.
0.02 2e+0 32 PtpAffx.221726.1.S1_s_at pmrna38760 hypothetical protein - 3e+0 At5g65740 protein binding / zinc ion binding C.G. S.X.
0.02 2e+0 32 PtpAffx.219180.1.S1_at pmrna35028 hypothetical protein - 2e-5 At1g78955 CAMS1 (Camelliol C synthase 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 32 Arabidopsis thaliana At3g47020 823855 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.05 2e+0 32 Glycine max GmaAffx.42864.1.S1_at CA799427 - - 2e-1 At4g38860 auxin-responsive protein, putative C.G. S.X.
0.04 6e-1 32 Hordeum vulgare Contig11406_at Contig11406 - - 3e-1 At4g16790 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 6e-1 34 Oryza sativa Os01g0559200 AK102611.1 - Hypothetical protein 4e-2 At2g46140 late embryogenesis abundant protein, putative / LEA protein, putative C.G. S.X.
0.05 5e+0 30 Triticum aestivum TaAffx.86620.1.S1_at CA604366 - - 4e-3 At3g60640 ATG8G (AUTOPHAGY 8G) C.G. S.X.
0.04 4e-1 32 Vitis vinifera 1618644_at CD005517 - - 1e-40 At5g57440 GS1 C.G. S.X.
0.04 5e-1 32 Zea mays Zm.9081.1.A1_at BM340497 - - 4e-1 At5g51510 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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