CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.222720.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.222720.1.S1_at pmrna40317 hypothetical protein - 7e+0 At5g38344 transmembrane receptor S.X. H.G.
0.25 43.6 PtpAffx.153759.2.A1_at CV244625 - - 3e-1 At5g54980 integral membrane family protein S.X. H.G.
0.14 23.5 PtpAffx.43824.1.S1_at CV257164 hypothetical protein - 3e-11 At5g64200 ATSC35 S.X. H.G.
0.14 23.5 PtpAffx.216715.1.S1_a_at pmrna31674 hypothetical protein - 3e-1 At1g10270 GRP23 (GLUTAMINE-RICH PROTEIN23) S.X. H.G.
0.04 6.9 PtpAffx.202384.1.S1_at pmrna4786 hypothetical protein - 2e-125 At2g47330 DEAD/DEAH box helicase, putative S.X. H.G.
0.03 5.2 PtpAffx.142.1.S1_s_at CV253962 hypothetical protein - 2e-3 At1g10390 nucleoporin family protein S.X. H.G.
0.02 3.6 PtpAffx.211215.1.S1_at pmrna22034 hypothetical protein - 2e-29 At5g54870 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.1 99.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.4 97.0 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3 96.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6 94.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0 92.9 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3 89.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 34 PtpAffx.210666.1.S1_at pmrna20917 hypothetical protein - 4e-1 At3g13500 unknown protein C.G. S.X.
0.01 6e-1 34 PtpAffx.208070.1.S1_at pmrna16028 hypothetical protein - 7e-30 At1g23230 unknown protein C.G. S.X.
0.01 6e-1 34 PtpAffx.205134.1.S1_at pmrna10163 hypothetical protein - 0 At5g63960 EMB2780 (EMBRYO DEFECTIVE 2780) C.G. S.X.
0.07 2e+0 32 PtpAffx.37974.1.A1_at CV231652 - - 2e+0 At4g22810 DNA-binding protein-related C.G. S.X.
0.01 2e+0 32 PtpAffx.224133.1.S1_at pmrna42381 cc-nbs-lrr resistance protein - 2e-3 At4g01160 BTB/POZ domain-containing protein C.G. S.X.
0.02 2e+0 32 PtpAffx.222290.1.S1_s_at pmrna39606 hypothetical protein - 3e+0 At1g53910 RAP2.12 C.G. S.X.
0.02 2e+0 32 PtpAffx.222290.1.S1_at pmrna39606 hypothetical protein - 3e+0 At1g53910 RAP2.12 C.G. S.X.
0.01 2e+0 32 PtpAffx.211358.1.S1_at pmrna22263 hypothetical protein - 2e-21 At1g06900 catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding C.G. S.X.
0.02 2e+0 32 PtpAffx.204487.1.S1_at pmrna8805 cytochrome P450 - 2e-1 At1g78490 CYP708A3 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e+0 30 Arabidopsis thaliana At5g38344 3771359 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, innate immune response;C:intrinsic to membrane, endomembrane system;PM - - - C.G. S.X.
0.05 2e+0 32 Glycine max Gma.14183.1.A1_at CD417154 - - 3e+0 At4g32660 AME3 C.G. S.X.
0.05 2e-1 34 Hordeum vulgare baak13l10_s_at baak13l10 - - 1e+0 At1g71470 unknown protein C.G. S.X.
0.05 8e-1 34 Oryza sativa Os05g0285050 9633.m01901 - - 3e+0 At4g21540 SPHK1 (SPHINGOSINE KINASE 1) C.G. S.X.
0.05 2e+0 32 Triticum aestivum TaAffx.31747.1.S1_at CA608611 - - 4e+0 At3g28120 unknown protein C.G. S.X.
0.06 5e-1 32 Vitis vinifera 1609114_at CF201212.1 - - 3e+0 At5g39581 unknown protein C.G. S.X.
0.03 3e+0 30 Zea mays Zm.2455.1.A1_at BM416746 SET domain protein 110 - 5e+0 At4g24420 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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