Gene omics information

Query gene ID	PtpAffx.222709.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.222709.1.S1_at	pmrna40297	hypothetical protein	-	2e-78	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	Ptp.864.3.S1_at	CK088925	hypothetical protein	-	8e-1	At4g27750	ISI1 (IMPAIRED SUCROSE INDUCTION 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.106236.1.S1_s_at	DN501710	hypothetical protein	-	2e-13	At5g08650	GTP-binding protein LepA, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.211461.1.S1_at	pmrna22464	hypothetical protein	-	8e-156	At2g45290	transketolase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.579.1.A1_at	CV240001	hypothetical protein	-	1e+0	At1g44760	universal stress protein (USP) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.4206.1.S1_at	CV236414	hypothetical protein	-	1e+1	At5g28850	calcium-binding EF hand family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	97.6	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.7	97.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.4	97.0	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	0	1437	PtpAffx.53019.1.S1_s_at	BU894473	hypothetical protein	-	2e-30	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	2e-92	341	Ptp.1452.1.S1_at	CK089905	-	-	8e+0	At5g12140	ATCYS1 (A. thaliana cystatin-1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	2e-33	145	PtpAffx.49627.1.A1_at	CV277188	hypothetical protein	-	7e-6	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.24872.1.A1_at	CV242999	hypothetical protein	-	7e-33	At3g24200	FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.209281.1.S1_at	pmrna18338	cation proton exchanger	-	3e-1	At2g23680	stress-responsive protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.202818.1.S1_at	pmrna5587	hypothetical protein	-	3e+0	At4g08895	inorganic phosphate transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	Ptp.6977.1.S1_s_at	BU861436	hypothetical protein	-	2e+0	At5g22440	60S ribosomal protein L10A (RPL10aC)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	34	PtpAffx.9143.2.A1_at	CV241187	hypothetical protein	-	1e-1	At4g30820	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	34	PtpAffx.32089.1.A1_a_at	CV244898	hypothetical protein	-	1e-1	At4g17950	DNA-binding family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	2e-78	293	Arabidopsis thaliana	At3g04870	819647	ZDS (ZETA-CAROTENE DESATURASE)	Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.43	2e-104	381	Glycine max	Gma.18060.1.S1_at	BU578633	-	-	8e-22	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	C.G.	S.X.	Please select
0.28	3e-27	123	Hordeum vulgare	Contig6532_at	Contig6532	-	-	4e-25	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	C.G.	S.X.	Please select
0.35	4e-32	141	Oryza sativa	Os07g0204900	AK065213.1	-	Zeta-carotene desaturase (Fragment)	1e-19	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	1e-30	135	Triticum aestivum	Ta.22990.1.S1_at	BG909133	zeta-carotene desaturase	-	4e-25	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	C.G.	S.X.	Please select
0.19	8e-54	210	Vitis vinifera	1621899_at	BQ796169	hypothetical protein LOC100245154	-	3e-23	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	C.G.	S.X.	Please select
0.30	8e-18	91	Zea mays	Zm.458.1.S1_at	AF047490.1	zeta carotene desaturase candidate	-	1e-12	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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