CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.222679.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.222679.1.S1_at pmrna40238 hypothetical protein - 3e-4 At1g64610 WD-40 repeat family protein S.X. H.G.
0.29 50.5 PtpAffx.127095.1.A1_at CV271967 - - 8e-30 At4g33470 hda14 (histone deacetylase 14) S.X. H.G.
0.24 41.8 PtpAffx.12217.1.A1_at CV236323 iaa-amino acid hydrolase 6 - 4e-49 At5g54140 ILL3 S.X. H.G.
0.19 32.7 PtpAffx.215363.1.S1_at pmrna29506 hypothetical protein - 3e+0 At5g52340 ATEXO70A2 (exocyst subunit EXO70 family protein A2) S.X. H.G.
0.18 30.8 PtpAffx.214834.1.S1_at pmrna28721 hypothetical protein - 1e-11 At2g20770 GCL2 (GCR2-LIKE 2) S.X. H.G.
0.18 30.8 PtpAffx.69627.1.A1_s_at CV249641 hypothetical protein - 5e+0 At5g04760 myb family transcription factor S.X. H.G.
0.18 30.8 PtpAffx.204709.1.S1_at pmrna9278 hypothetical protein - 2e-36 At3g19540 unknown protein S.X. H.G.
0.12 19.6 PtpAffx.133994.1.A1_at CV254054 SET domain protein - 1e+0 At3g47920 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.6 99.4 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8 94.9 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5 94.3 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.82 0 1439 PtpAffx.207035.1.S1_at pmrna13941 hypothetical protein - 3e-3 At5g53500 WD-40 repeat family protein C.G. S.X.
0.03 9e-8 59 PtpAffx.124734.1.S1_at CK106248 hypothetical protein - 9e-51 At5g54200 WD-40 repeat family protein C.G. S.X.
0.03 4e-4 48 PtpAffx.212562.1.S1_at pmrna24616 hypothetical protein - 5e-12 At5g53500 WD-40 repeat family protein C.G. S.X.
0.04 6e-3 44 PtpAffx.206237.1.S1_at pmrna12376 hypothetical protein - 2e-33 At2g37670 WD-40 repeat family protein C.G. S.X.
0.03 2e-2 42 PtpAffx.210291.1.S1_x_at pmrna20247 hypothetical protein - 1e-9 At5g53500 WD-40 repeat family protein C.G. S.X.
0.01 9e-2 40 PtpAffx.18937.1.A1_at CV240121 hypothetical protein - 2e+0 At4g38620 MYB4 C.G. S.X.
0.01 3e-1 38 PtpAffx.201617.1.S1_s_at pmrna3203 hypothetical protein - 6e-19 At4g16310 LDL3 (LSD1-LIKE3) C.G. S.X.
0.01 3e-1 38 PtpAffx.201618.1.S1_at pmrna3207 hypothetical protein - 8e-18 At4g36180 leucine-rich repeat family protein C.G. S.X.
0.01 3e-1 38 PtpAffx.201617.1.S1_at pmrna3203 hypothetical protein - 6e-19 At4g16310 LDL3 (LSD1-LIKE3) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-4 48 Arabidopsis thaliana At1g64610 842769 WD-40 repeat family protein F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPA - - - C.G. S.X.
0.09 4e-4 48 Glycine max GmaAffx.63516.1.S1_at BU765215 - - 6e-6 At5g24320 WD-40 repeat family protein C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HVSMEn0020M17r2_at HVSMEn0020M17r2 - - 8e-1 At3g15760 unknown protein C.G. S.X.
0.05 2e-6 56 Oryza sativa Os02g0638900 AK111517.1 - Peptidase S9A, prolyl oligopeptidase, N-terminalbeta-propeller domain containing protein 4e-13 At5g54200 WD-40 repeat family protein C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.7157.1.S1_at CA667298 - - 5e-2 At3g21080 ABC transporter-related C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1615141_at CB344835 hypothetical protein LOC100247840 - 2e+0 At3g01970 WRKY45 C.G. S.X.
0.04 1e-7 57 Zea mays Zm.5369.1.A1_at AY112342.1 - - 2e+1 At5g23920 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage