Gene omics information

Query gene ID	PtpAffx.222355.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	80.5	PtpAffx.222355.1.S1_at	pmrna39704	hypothetical protein	-	2e-2	At4g17215	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.206198.1.S1_at	pmrna12307	-	-	2e-4	At1g78380	ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.222240.1.S1_at	pmrna39525	hypothetical protein	-	2e+0	At4g24231	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.82626.1.A1_at	CV239761	-	-	4e+0	At5g04260	WCRKC2 (WCRKC THIOREDOXIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.223995.1.S1_at	pmrna42224	hypothetical protein	-	9e-7	At5g27270	EMB976 (EMBRYO DEFECTIVE 976)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.211658.1.S1_s_at	pmrna22844	hypothetical protein	-	6e-1	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.219071.1.S1_at	pmrna34877	hypothetical protein	-	2e-34	Atcg00350	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.212325.1.S1_s_at	pmrna24169	-	-	4e-1	At4g21560	VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.213427.1.S1_at	pmrna26255	hypothetical protein	-	2e-38	At2g05220	40S ribosomal protein S17 (RPS17B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.5452.3.A1_at	CV281348	-	-	7e-24	At2g19720	rps15ab (ribosomal protein S15A B)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.6	99.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
11.7	99.2	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.1	97.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	7e-105	381	PtpAffx.212598.1.S1_x_at	pmrna24675	hypothetical protein	-	3e+0	At2g16505	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	2e-95	349	PtpAffx.212594.1.S1_x_at	pmrna24671	hypothetical protein	-	3e+0	At5g35525	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.33	9e-95	347	PtpAffx.212596.1.S1_at	pmrna24673	hypothetical protein	-	9e-1	At5g46730	glycine-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.74	6e-93	341	PtpAffx.212597.1.S1_at	pmrna24674	hypothetical protein	-	1e+0	At5g46730	glycine-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.39	8e-89	327	PtpAffx.218785.1.S1_x_at	pmrna34514	hypothetical protein	-	7e-1	At5g50890	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	3e-88	325	PtpAffx.212593.1.S1_x_at	pmrna24670	hypothetical protein	-	7e-1	At5g46730	glycine-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	9e-18	91	PtpAffx.210271.1.S1_at	pmrna20203	hypothetical protein	-	3e+0	At1g02070	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	3e-17	89	PtpAffx.215331.1.S1_at	pmrna29455	hypothetical protein	-	2e-1	At1g34500	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	3e-17	89	PtpAffx.212600.1.S1_s_at	pmrna24677	hypothetical protein	-	2e-1	At1g34500	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-2	40	Arabidopsis thaliana	At4g17215	827433	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.58370.1.A1_at	BE660224	-	-	2e-13	At2g45290	transketolase, putative	C.G.	S.X.	Please select
0.03	4e-2	38	Hordeum vulgare	Contig18504_s_at	Contig18504	-	-	2e-5	At1g60940	SNRK2.10 (SNF1-RELATED PROTEIN KINASE 2.10)	C.G.	S.X.	Please select
0.03	4e-2	40	Oryza sativa	OsAffx.23978.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-2	40	Triticum aestivum	Ta.14176.1.S1_a_at	BJ243591	-	-	2e-1	At5g27690	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.04	2e-2	38	Vitis vinifera	1612996_at	CD798919	-	-	5e-2	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	ZmAffx.1037.1.A1_at	AI881746	-	-	8e-1	At1g46768	RAP2.1 (related to AP2 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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