Gene omics information

Query gene ID	PtpAffx.222228.1.S1_s_at
Gene name	predicted small molecule transporter
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	93.6	PtpAffx.222228.1.S1_s_at	pmrna39503	predicted small molecule transporter	-	9e-22	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.76470.1.A1_at	CV229100	f-box family protein	-	2e-1	At3g53100	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.57186.1.A1_a_at	CV233728	hypothetical protein /// gdp-mannose 4,6-dehydratase	-	8e-49	At3g51160	MUR1 (MURUS 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.3698.2.S1_at	BU894200	hypothetical protein	-	1e-82	At1g77610	glucose-6-phosphate/phosphate translocator-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.7623.1.A1_at	CV229183	hypothetical protein	-	2e-2	At3g48800	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	Ptp.4715.2.S1_s_at	CV228991	hypothetical protein	-	2e-9	At4g30160	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.1	99.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
11.1	99.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2771	PtpAffx.222228.1.S1_at	pmrna39503	predicted small molecule transporter	-	9e-22	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	3e-28	127	PtpAffx.153782.1.A1_at	CV243154	-	-	2e+0	At1g31200	ATPP2-A9 (Phloem protein 2-A9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	5e-27	123	PtpAffx.159941.1.A1_at	CV254632	predicted small molecule transporter /// predicted small molecule transporter	-	1e-1	At1g80650	RTL1 (RNase three-like protein 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.52181.1.A1_at	CK095242	-	-	1e+0	At1g47680	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.6733.1.S1_s_at	CV278263	-	-	3e-5	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.2374.1.A1_at	CA925843	-	-	6e-6	At1g70450	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.2374.1.A1_s_at	CA925843	hypothetical protein	-	6e-6	At1g70450	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	Ptp.5031.2.S1_at	BU886437	hypothetical protein	-	3e-16	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e+0	34	PtpAffx.6733.2.A1_s_at	BP929726	hypothetical protein	-	7e-8	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	9e-22	105	Arabidopsis thaliana	At5g35730	833549	EXS family protein / ERD1/XPR1/SYG1 family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	1e-46	188	Glycine max	Gma.1899.2.A1_at	CD411173	-	-	2e-9	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please select
0.17	6e-9	61	Hordeum vulgare	Contig14948_at	Contig14948	-	-	1e-4	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please select
0.20	2e-18	95	Oryza sativa	Os12g0595000	AK065252.1	-	EXS, C-terminal domain containing protein	3e-13	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	9e-22	105	Triticum aestivum	Ta.10706.1.S1_x_at	CK153112	-	-	5e-11	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Vitis vinifera	1622358_s_at	CF212311	hypothetical protein LOC100248535	-	7e-2	At2g28305	unknown protein	C.G.	S.X.	Please select
0.05	3e-4	46	Zea mays	Zm.8183.1.A1_at	BM073193	-	-	1e+0	At4g17980	anac071 (Arabidopsis NAC domain containing protein 71)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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