CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.222184.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 PtpAffx.222184.1.S1_at pmrna39436 hypothetical protein - 3e-3 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative S.X. H.G.
0.35 59.7 PtpAffx.210708.1.S1_s_at pmrna21002 hypothetical protein - 1e-1 At2g04570 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.32 55.2 PtpAffx.225735.1.S1_at pmrna45304 hypothetical protein - 3e+0 At4g20780 calcium-binding protein, putative S.X. H.G.
0.27 47.1 PtpAffx.212310.1.S1_at pmrna24137 hypothetical protein - 1e+0 At3g04220 disease resistance protein (TIR-NBS-LRR class), putative S.X. H.G.
0.26 45.2 PtpAffx.134238.1.A1_a_at CV242930 hypothetical protein - 5e-5 At2g47350 PAPA-1-like family protein / zinc finger (HIT type) family protein S.X. H.G.
0.21 36.5 PtpAffx.220275.1.S1_at pmrna36644 hypothetical protein - 3e-1 At4g37409 unknown protein S.X. H.G.
0.20 34.6 PtpAffx.202362.1.S1_at pmrna4740 hypothetical protein - 5e-3 At3g09760 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.19 32.7 PtpAffx.216393.1.S1_at pmrna31148 hypothetical protein - 1e-23 At3g52050 5'-3' exonuclease family protein S.X. H.G.
0.17 29.1 Ptp.5583.2.S1_at CV245022 hypothetical protein - 9e-24 At2g01250 60S ribosomal protein L7 (RPL7B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.8 99.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
10.6 99.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.0 98.0 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0 95.3 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5 94.3 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4 94.0 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 1e-64 246 PtpAffx.223065.1.S1_x_at pmrna40862 hypothetical protein - 1e-17 At5g53540 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
0.29 1e-64 246 PtpAffx.220844.1.S1_at pmrna37292 hypothetical protein - 3e-29 At5g53540 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
0.44 1e-52 206 PtpAffx.216108.1.S1_x_at pmrna30691 hypothetical protein - 9e-22 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
0.44 1e-52 206 PtpAffx.216108.1.S1_s_at pmrna30691 hypothetical protein - 9e-22 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
0.24 2e-45 182 PtpAffx.41594.1.S1_at DN486221 hypothetical protein - 7e-88 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
0.41 1e-43 176 PtpAffx.222639.1.S1_at pmrna40185 hypothetical protein - 1e-13 At5g53540 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
0.17 8e-23 107 PtpAffx.210345.1.S1_x_at pmrna20339 hypothetical protein - 2e-10 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
0.17 8e-23 107 PtpAffx.210345.1.S1_s_at pmrna20339 hypothetical protein - 2e-10 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
0.23 5e-21 101 PtpAffx.223496.1.S1_x_at pmrna41530 hypothetical protein - 1e-10 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-3 42 Arabidopsis thaliana At4g27680 828882 MSP1 protein, putative / intramitochondrial sorting protein, putative F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;OBMFPAV - - - C.G. S.X.
0.09 3e-4 46 Glycine max GmaAffx.63297.2.S1_at BM892069 - - 2e-32 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
0.06 1e+0 32 Hordeum vulgare HU07L18r_x_at HU07L18r - - 2e+0 At3g07450 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.02 1e+0 34 Oryza sativa Os09g0536400 AK068084.1 - Thaumatin, pathogenesis-related family protein 2e-4 At1g75050 - C.G. S.X.
0.04 7e-1 34 Triticum aestivum TaAffx.113409.1.S1_at CA613296 - - 4e+0 At3g01250 unknown protein C.G. S.X.
0.15 4e-15 79 Vitis vinifera 1622625_at CD717253 - - 3e-79 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.174.1.A1_at AI668269 SAUR12 - auxin-responsive SAUR family member - 3e+0 At5g59060 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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