Gene omics information

Query gene ID PtpAffx.22176.1.A1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7192.6PtpAffx.22176.1.A1_atCV239407hypothetical protein-1e-2At3g03020unknown proteinS.X.H.G.
0.4471.9PtpAffx.95576.1.A1_atCV240758--6e+0At5g61410RPES.X.H.G.
0.3661.6PtpAffx.114935.1.A1_atCV240866hypothetical protein-2e-2At3g46620zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.3357.5PtpAffx.210935.1.S1_atpmrna21488hypothetical protein-1e-5At3g05400sugar transporter, putativeS.X.H.G.
0.2950.5PtpAffx.211761.1.S1_atpmrna23057hypothetical protein-8e-10At1g02860NLA (nitrogen limitation adaptation)S.X.H.G.
0.2238.3PtpAffx.135298.1.A1_atCV232578hypothetical protein-1e+0At1g16490MYB58 (MYB DOMAIN PROTEIN 58)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
28.799.9GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
24.699.8GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
15.699.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
5.497.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.590.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.381.0GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue series
0.974.2GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.974.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
0.974.2GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.974.2GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.960886PtpAffx.22176.1.A1_a_atCV239407hypothetical protein-1e-2At3g03020unknown proteinC.G.S.X.
0.563e-109395PtpAffx.22176.2.S1_atBU874098--1e-1At5g11190SHN3 (shine3)C.G.S.X.
0.058e-548PtpAffx.205449.1.S1_atpmrna10776hypothetical protein-6e-2At5g26673-C.G.S.X.
0.028e-238PtpAffx.75063.1.S1_atDN487936--4e-2At3g03020unknown proteinC.G.S.X.
0.048e-238PtpAffx.110023.1.A1_atCK095393--7e-2At1g70190ribosomal protein L12 family proteinC.G.S.X.
0.038e-238PtpAffx.104125.1.S1_atCA825191hypothetical protein-1e+0At4g08910unknown proteinC.G.S.X.
0.038e-238Ptp.7143.1.S1_atDN485365cinnamoyl CoA reductase-like protein-3e-3At5g19440cinnamyl-alcohol dehydrogenase, putative (CAD)C.G.S.X.
0.043e-136PtpAffx.221671.1.S1_atpmrna38672hypothetical protein-9e-1At1g75630AVA-P4C.G.S.X.
0.023e-136PtpAffx.218576.1.S1_s_atpmrna34238pho1-like protein-3e-16At2g03240-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.061e-240Arabidopsis thalianaAt3g03020821156unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;P---C.G.S.X.
0.042e-240Glycine maxGmaAffx.77156.2.S1_atBG359491--1e-2At5g55508unknown proteinC.G.S.X.
0.041e-136Hordeum vulgareContig13143_s_atContig13143--5e+0At5g38565-C.G.S.X.
0.057e-342Oryza sativaOs11g05080019639.m02824--5e-2At3g03020unknown proteinC.G.S.X.
0.064e-342Triticum aestivumTa.4977.2.A1_x_atBJ287285--6e-1At3g23930unknown proteinC.G.S.X.
0.033e-134Vitis vinifera1621823_atCF214240hypothetical protein LOC100253216-4e+0At5g66000unknown proteinC.G.S.X.
0.041e-136Zea maysZm.11920.1.A1_atBM381842--2e-2At3g03020unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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