Gene omics information

Query gene ID	PtpAffx.22176.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.22176.1.A1_at	CV239407	hypothetical protein	-	1e-2	At3g03020	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.95576.1.A1_at	CV240758	-	-	6e+0	At5g61410	RPE	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.114935.1.A1_at	CV240866	hypothetical protein	-	2e-2	At3g46620	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.210935.1.S1_at	pmrna21488	hypothetical protein	-	1e-5	At3g05400	sugar transporter, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.211761.1.S1_at	pmrna23057	hypothetical protein	-	8e-10	At1g02860	NLA (nitrogen limitation adaptation)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.135298.1.A1_at	CV232578	hypothetical protein	-	1e+0	At1g16490	MYB58 (MYB DOMAIN PROTEIN 58)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.7	99.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
24.6	99.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
15.6	99.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.4	97.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.3	81.0	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
0.9	74.2	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.9	74.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
0.9	74.2	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.9	74.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	886	PtpAffx.22176.1.A1_a_at	CV239407	hypothetical protein	-	1e-2	At3g03020	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.56	3e-109	395	PtpAffx.22176.2.S1_at	BU874098	-	-	1e-1	At5g11190	SHN3 (shine3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	8e-5	48	PtpAffx.205449.1.S1_at	pmrna10776	hypothetical protein	-	6e-2	At5g26673	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-2	38	PtpAffx.75063.1.S1_at	DN487936	-	-	4e-2	At3g03020	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e-2	38	PtpAffx.110023.1.A1_at	CK095393	-	-	7e-2	At1g70190	ribosomal protein L12 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	8e-2	38	PtpAffx.104125.1.S1_at	CA825191	hypothetical protein	-	1e+0	At4g08910	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	8e-2	38	Ptp.7143.1.S1_at	DN485365	cinnamoyl CoA reductase-like protein	-	3e-3	At5g19440	cinnamyl-alcohol dehydrogenase, putative (CAD)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-1	36	PtpAffx.221671.1.S1_at	pmrna38672	hypothetical protein	-	9e-1	At1g75630	AVA-P4	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	36	PtpAffx.218576.1.S1_s_at	pmrna34238	pho1-like protein	-	3e-16	At2g03240	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-2	40	Arabidopsis thaliana	At3g03020	821156	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-2	40	Glycine max	GmaAffx.77156.2.S1_at	BG359491	-	-	1e-2	At5g55508	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	Contig13143_s_at	Contig13143	-	-	5e+0	At5g38565	-	C.G.	S.X.	Please select
0.05	7e-3	42	Oryza sativa	Os11g0508001	9639.m02824	-	-	5e-2	At3g03020	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-3	42	Triticum aestivum	Ta.4977.2.A1_x_at	BJ287285	-	-	6e-1	At3g23930	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1621823_at	CF214240	hypothetical protein LOC100253216	-	4e+0	At5g66000	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Zea mays	Zm.11920.1.A1_at	BM381842	-	-	2e-2	At3g03020	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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