Gene omics information

Query gene ID	PtpAffx.221733.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.3	PtpAffx.221733.1.S1_s_at	pmrna38769	hypothetical protein	-	8e-5	At1g32730	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.221607.1.S1_at	pmrna38578	hypothetical protein	-	4e-2	At5g37930	seven in absentia (SINA) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.249.450.S1_at	CN518216	hypothetical protein	-	1e+0	At1g52590	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.210578.1.S1_at	pmrna20747	hypothetical protein	-	1e-27	At5g66540	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.215338.1.S1_s_at	pmrna29464	hypothetical protein	-	8e-15	At2g45320	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.113553.1.S1_a_at	CX182949	hypothetical protein	-	6e-31	At5g65620	peptidase M3 family protein / thimet oligopeptidase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.78969.1.S1_at	DN501659	hypothetical protein	-	1e-6	At1g02145	transferase, transferring glycosyl groups	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.104237.1.A1_at	CV254710	-	-	4e-8	At1g72990	BGAL17 (beta-galactosidase 17)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.203143.1.S1_at	pmrna6228	hypothetical protein	-	1e-56	At1g17760	CSTF77	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.207427.1.S1_at	pmrna14740	hypothetical protein	-	5e-29	At5g65685	soluble glycogen synthase-related	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.1	98.1	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.8	96.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.7	94.7	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	2e-58	224	PtpAffx.215136.1.S1_at	pmrna29154	hypothetical protein	-	2e-12	At1g32730	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	34	PtpAffx.214476.1.S1_at	pmrna28154	hypothetical protein	-	5e-1	At5g58020	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	32	PtpAffx.35479.1.S1_at	DN489262	-	-	6e-1	At3g21680	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	2e+0	32	PtpAffx.220689.1.S1_at	pmrna37099	-	-	4e+0	At1g64142	CPuORF23 (Conserved peptide upstream open reading frame 23)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	32	PtpAffx.205252.1.S1_s_at	pmrna10410	hypothetical protein	-	1e-57	At5g23150	HUA2 (ENHANCER OF AG-4 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	32	PtpAffx.205252.1.S1_at	pmrna10410	hypothetical protein	-	1e-57	At5g23150	HUA2 (ENHANCER OF AG-4 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	30	PtpAffx.9976.1.S1_at	BP930073	hypothetical protein	-	1e-11	At2g20760	protein binding / structural molecule	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e+0	30	PtpAffx.94756.1.S1_at	DN498310	hypothetical protein	-	5e-47	At1g33270	patatin-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	7e+0	30	PtpAffx.3376.1.A1_at	DN493373	hypothetical protein	-	3e-1	At1g27730	STZ (salt tolerance zinc finger)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	8e-5	46	Arabidopsis thaliana	At1g32730	840167	unknown protein	F:unknown;P:unknown;C:chloroplast;MPOBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	32	Glycine max	PsAffx.psMA004xE07f_at	PsAffx.psMA004xE07f	-	-	1e+0	At1g79070	SNARE-associated protein-related	C.G.	S.X.	Please select
0.05	1e-1	34	Hordeum vulgare	HV03O09u_at	HV03O09u	-	-	9e-1	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	C.G.	S.X.	Please select
0.17	4e-11	67	Oryza sativa	OsAffx.29015.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e-1	34	Triticum aestivum	TaAffx.64304.1.S1_at	BJ305646	-	-	1e-3	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select
0.07	2e-2	36	Vitis vinifera	1619617_at	CF202047.1	-	-	8e-1	At3g48940	remorin family protein	C.G.	S.X.	Please select
0.04	3e-2	36	Zea mays	Zm.13842.1.A1_at	AY104042.1	-	-	1e-1	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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