CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.221390.1.S1_x_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 88.1 PtpAffx.221390.1.S1_x_at pmrna38261 hypothetical protein - 2e+0 At5g01750 unknown protein S.X. H.G.
0.07 11.6 PtpAffx.754.1.A1_at CV277885 - - 2e-9 At1g49390 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.04 6.9 Ptp.2838.2.A1_at DN485482 - - 9e+0 At5g57560 TCH4 (Touch 4) S.X. H.G.
0.03 5.2 PtpAffx.212331.1.S1_at pmrna24177 hypothetical protein - 1e+0 At5g08150 unknown protein S.X. H.G.
0.02 3.6 PtpAffx.205398.1.S1_at pmrna10690 hypothetical protein - 4e-1 At2g34330 unknown protein S.X. H.G.
0.01 2.2 PtpAffx.221089.1.S1_at pmrna37678 hypothetical protein - 1e-1 At4g37730 AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7) S.X. H.G.
0.01 2.2 PtpAffx.125658.1.A1_at DN487640 - - 1e+0 At1g79880 La domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.1 98.5 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.1 98.1 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.5 97.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.0 97.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.2 96.8 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9 96.5 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7 96.3 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6 96.2 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.5 96.1 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.2 95.6 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 5e-91 333 PtpAffx.225478.1.S1_at pmrna44846 hypothetical protein - 8e-10 At1g29720 protein kinase family protein C.G. S.X.
0.27 5e-91 333 PtpAffx.225478.1.S1_x_at pmrna44846 hypothetical protein - 8e-10 At1g29720 protein kinase family protein C.G. S.X.
0.81 7e-81 299 PtpAffx.217718.1.S1_x_at pmrna33084 hypothetical protein - 2e+0 At5g01750 unknown protein C.G. S.X.
0.11 2e-56 218 PtpAffx.219332.1.S1_x_at pmrna35221 hypothetical protein - 2e-14 At1g29720 protein kinase family protein C.G. S.X.
0.16 8e-16 83 PtpAffx.220931.1.S1_x_at pmrna37424 hypothetical protein - 3e-11 At1g07650 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.20 8e-16 83 PtpAffx.218851.1.S1_at pmrna34591 hypothetical protein - 4e-1 At1g16670 protein kinase family protein C.G. S.X.
0.13 2e-13 75 PtpAffx.225420.1.S1_x_at pmrna44760 hypothetical protein - 2e-16 At1g29720 protein kinase family protein C.G. S.X.
0.26 2e-13 75 PtpAffx.221681.1.S1_at pmrna38690 hypothetical protein - 2e-1 At1g16670 protein kinase family protein C.G. S.X.
0.19 3e-12 71 PtpAffx.217752.1.S1_at pmrna33140 hypothetical protein - 1e-10 At1g29720 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 32 Arabidopsis thaliana At5g01750 831684 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PF - - - C.G. S.X.
0.07 4e-2 38 Glycine max GmaAffx.40257.1.A1_at BE822003 - - 2e-1 At1g02335 GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.) C.G. S.X.
0.05 4e+0 30 Hordeum vulgare HT07N06u_at HT07N06u - - 1e+1 At5g10750 unknown protein C.G. S.X.
0.03 1e-3 44 Oryza sativa Os06g0676600 AK103523.1 - Protein kinase domain containing protein 4e-6 At3g09010 protein kinase family protein C.G. S.X.
0.07 2e-6 52 Triticum aestivum Ta.3850.2.S1_at CD939384 - - 1e-1 At5g17650 glycine/proline-rich protein C.G. S.X.
0.06 3e-2 36 Vitis vinifera 1620080_at CB345665 hypothetical protein LOC100252174 - 5e-3 At4g23230 protein kinase family protein C.G. S.X.
0.03 1e+1 28 Zea mays Zm.9951.1.A1_at BM349019 - - 4e-1 At3g48100 ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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