Gene omics information

Query gene ID	PtpAffx.221342.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.72	92.7	PtpAffx.221342.1.S1_at	pmrna38177	hypothetical protein	-	1e-20	At4g10000	electron carrier/ protein disulfide oxidoreductase	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	Ptp.5990.1.S1_at	CV281006	-	-	5e-29	At2g42220	rhodanese-like domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	Ptp.1181.1.S1_s_at	CK089795	cytochrome P450 fatty acid hydroperoxide lyase	-	3e+0	At4g28180	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.5942.1.S1_x_at	CV283216	peroxiredoxin	-	9e-46	At3g26060	ATPRX Q	S.X.	H.G.	Please selecteFP Browser (expression)
0.52	79.4	Ptp.5948.1.S1_at	CV262999	hypothetical protein	-	2e+0	At5g40370	glutaredoxin, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.147900.1.S1_s_at	AJ779369	hypothetical protein	-	1e-3	At1g56085	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.212881.1.S1_x_at	pmrna25209	hypothetical protein	-	4e-7	At4g24930	thylakoid lumenal 17.9 kDa protein, chloroplast	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.86388.1.S1_at	CX167974	cytochrome P450 fatty acid hydroperoxide lyase	-	1e-4	At2g22100	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.1263.1.A1_a_at	CV237429	hypothetical protein	-	4e-1	At5g08050	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.1746.1.A1_at	CV236183	hypothetical protein	-	2e+0	At5g17790	VAR3 (VARIEGATED 3)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	96.8	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.2	96.8	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.1	96.8	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.1	96.8	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.6	96.2	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1	95.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0	95.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0	95.3	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0	95.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	1e-88	327	PtpAffx.249.22.A1_a_at	CV272359	-	-	1e-1	At4g10000	electron carrier/ protein disulfide oxidoreductase	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	1e-88	327	PtpAffx.249.22.A1_x_at	CV272359	-	-	1e-1	At4g10000	electron carrier/ protein disulfide oxidoreductase	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	3e-37	157	PtpAffx.6271.1.S1_at	CV240407	-	-	2e+0	At2g31710	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.58813.1.A1_at	CK090185	heavy metal ATPase	-	5e+0	Atcg00470	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	Ptp.7534.1.S1_at	CF233591	hypothetical protein	-	4e-5	At1g15770	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	Ptp.7534.1.S1_s_at	CF233591	hypothetical protein	-	4e-5	At1g15770	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.201432.1.S1_at	pmrna2828	-	-	2e-42	At5g24740	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.68917.3.S1_at	CV279059	hypothetical protein	-	5e+0	At3g47610	transcription regulator/ zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.4599.1.A1_at	CV227174	hypothetical protein	-	4e-1	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-20	101	Arabidopsis thaliana	At4g10000	826591	electron carrier/ protein disulfide oxidoreductase	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:chloroplast;BOPAFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	1e-26	121	Glycine max	GmaAffx.81084.1.S1_at	BE612024	-	-	2e-21	At4g10000	electron carrier/ protein disulfide oxidoreductase	C.G.	S.X.	Please select
0.27	2e-23	109	Hordeum vulgare	Contig10506_at	Contig10506	-	-	1e-7	At4g10000	electron carrier/ protein disulfide oxidoreductase	C.G.	S.X.	Please select
0.02	1e+0	36	Oryza sativa	Os03g0734400	CB966465	-	Ribosomal protein L7/L12 family protein	2e+0	At1g02710	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.79953.1.S1_at	CA705194	-	-	3e-1	At5g33330	RNase H domain-containing protein	C.G.	S.X.	Please select
0.14	1e-32	139	Vitis vinifera	1621408_at	BQ798831	hypothetical protein LOC100244724	-	5e+0	Atmg01370	-	C.G.	S.X.	Please select
0.16	2e-26	119	Zea mays	Zm.19167.1.A1_a_at	AI629472	hypothetical protein LOC100194096	-	1e-17	At4g10000	electron carrier/ protein disulfide oxidoreductase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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