CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.221339.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 75.4 PtpAffx.221339.1.S1_at pmrna38168 hypothetical protein - 2e-22 At1g76680 OPR1 S.X. H.G.
0.12 19.6 PtpAffx.71886.2.S1_at BU881886 methionine sulfoxide reductase type /// methionine sulfoxide reductase type - 1e-14 At5g07470 PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3) S.X. H.G.
0.10 16.3 PtpAffx.149231.1.S1_at CV237182 - - 2e-7 At5g02780 In2-1 protein, putative S.X. H.G.
0.09 14.6 PtpAffx.153007.1.A1_at CV273965 - - 4e+1 At4g37440 unknown protein S.X. H.G.
0.02 3.6 PtpAffx.219468.1.S1_at pmrna35394 hypothetical protein - 3e-1 At1g76930 ATEXT4 (EXTENSIN 4) S.X. H.G.
0.02 3.6 PtpAffx.98284.1.S1_at DN501196 - - 1e-1 At5g44150 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.0 99.2 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
11.0 99.1 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.8 98.4 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0 96.6 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.9 96.5 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1 95.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 2e-103 375 PtpAffx.2548.1.A1_at CV259452 - - 4e-12 At1g76690 OPR2 C.G. S.X.
0.17 2e-32 139 PtpAffx.26497.1.S1_at CK105060 - - 3e-52 At1g76690 OPR2 C.G. S.X.
0.08 2e-10 65 PtpAffx.216720.1.S1_s_at pmrna31684 hypothetical protein - 1e-14 At1g76690 OPR2 C.G. S.X.
0.15 2e-8 59 PtpAffx.78869.1.S1_s_at BU880489 hypothetical protein - 9e-14 At1g76690 OPR2 C.G. S.X.
0.08 2e-8 59 PtpAffx.208369.1.S1_at pmrna16643 hypothetical protein - 3e-15 At1g76680 OPR1 C.G. S.X.
0.03 8e-1 34 PtpAffx.209682.1.S1_at pmrna19110 hypothetical protein - 3e-12 At5g28237 tryptophan synthase, beta subunit, putative C.G. S.X.
0.03 3e+0 32 PtpAffx.90918.1.S1_at CF236401 hypothetical protein - 3e-5 At3g58040 SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) C.G. S.X.
0.04 3e+0 32 PtpAffx.214791.1.S1_s_at pmrna28640 hypothetical protein - 1e+0 At5g18880 - C.G. S.X.
0.02 3e+0 32 PtpAffx.212553.1.S1_at pmrna24602 hypothetical protein - 7e-1 At1g74670 gibberellin-responsive protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-22 105 Arabidopsis thaliana At1g76680 844001 OPR1 Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. - - - C.G. S.X.
0.36 4e-12 71 Glycine max GmaAffx.90530.1.S1_at CF806255 - - 1e-12 At1g76680 OPR1 C.G. S.X.
0.16 3e-13 73 Hordeum vulgare Contig5146_at Contig5146 - - 4e-21 At1g76690 OPR2 C.G. S.X.
0.14 8e-11 67 Oryza sativa Os.15627.1.A1_at - - - 0 C.G. S.X.
0.18 2e-7 56 Triticum aestivum Ta.5509.3.S1_at CA604882 - - 1e-2 At1g17990 12-oxophytodienoate reductase, putative C.G. S.X.
0.07 7e-4 42 Vitis vinifera 1619407_s_at CA809049 hypothetical protein LOC100256548 - 3e-12 At1g76690 OPR2 C.G. S.X.
0.15 1e-6 52 Zea mays Zm.7548.1.A1_at BM078903 12-oxo-phytodienoic acid reductase5 - 5e-11 At1g76690 OPR2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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