Gene omics information

Query gene ID	PtpAffx.221305.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	PtpAffx.221305.1.S1_at	pmrna38092	hypothetical protein	-	4e+0	At4g25570	ACYB-2	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.214207.1.S1_at	pmrna27647	hypothetical protein	-	9e-1	At5g11590	TINY2 (TINY2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.202174.1.S1_at	pmrna4345	hypothetical protein	-	2e+0	At3g57000	nucleolar essential protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.205245.1.S1_at	pmrna10394	-	-	5e-3	At1g24260	SEP3 (SEPALLATA3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.222952.1.S1_at	pmrna40688	hypothetical protein	-	8e+0	At1g58460	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.209813.1.S1_x_at	pmrna19353	hypothetical protein	-	1e-2	At1g29200	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.219846.1.S1_at	pmrna35995	hypothetical protein	-	2e+1	At4g21970	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.6	99.8	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
17.2	99.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
8.1	98.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.7	97.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.5	96.1	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	PtpAffx.94929.2.A1_a_at	CV266234	hypothetical protein	-	5e-9	At5g52980	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.94929.1.A1_at	CV242435	hypothetical protein	-	1e-14	At5g52980	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.31765.1.S1_at	CF230920	hypothetical protein	-	1e-18	At1g31970	STRS1 (STRESS RESPONSE SUPPRESSOR 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.209131.1.S1_at	pmrna18075	-	-	1e+0	At5g57550	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.202258.1.S1_at	pmrna4524	hypothetical protein	-	3e+0	At5g35945	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	Ptp.5788.2.S1_at	BU834689	high mobility group family	-	2e-18	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.43715.1.A1_at	CV260413	-	-	1e-1	At5g44130	FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e+0	32	PtpAffx.4106.2.S1_s_at	CF229894	hypothetical protein	-	6e-9	At3g48610	phosphoesterase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e+0	32	PtpAffx.4106.2.S1_at	CF229894	hypothetical protein	-	6e-9	At3g48610	phosphoesterase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g25570	828662	ACYB-2	Encodes cytochrome b561.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-1	36	Glycine max	GmaAffx.76437.1.S1_at	BE610685	-	-	2e-12	At5g39590	-	C.G.	S.X.	Please select
0.04	5e-1	34	Hordeum vulgare	HS07P13u_s_at	HS07P13u	-	-	5e-5	At3g16780	60S ribosomal protein L19 (RPL19B)	C.G.	S.X.	Please select
0.02	7e+0	32	Oryza sativa	Os04g0194400	9632.m01055	-	Transferase family protein	1e+1	At3g01513	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+1	30	Triticum aestivum	TaAffx.4336.1.S1_at	CA744578	-	-	2e-8	At5g16715	EMB2247 (embryo defective 2247)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1619544_at	CK138178.1	-	-	7e-24	At5g17020	XPO1A	C.G.	S.X.	Please select
0.04	6e+0	30	Zea mays	ZmAffx.1036.1.A1_at	AI881726	-	-	1e-1	At2g43795	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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