Gene omics information

Query gene ID	PtpAffx.221191.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	99.5	PtpAffx.221191.1.S1_at	pmrna37880	hypothetical protein	-	2e-41	At4g02630	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	Ptp.4615.1.S1_at	CN523657	hypothetical protein	-	2e-21	At1g53730	SRF6 (STRUBBELIG-RECEPTOR FAMILY 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.18830.1.S1_at	CV239939	-	-	8e-3	At4g31340	myosin heavy chain-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.211264.1.S1_at	pmrna22102	-	-	7e-8	At1g33420	PHD finger family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.201717.1.S1_at	pmrna3411	hypothetical protein	-	5e-32	At3g63270	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.03	5.2	Ptp.2437.1.S1_at	CV226303	hypothetical protein	-	7e-9	At1g13380	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.10616.1.S1_at	BP936015	hypothetical protein	-	1e-63	At2g42910	ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.17099.1.A1_at	CV244560	hypothetical protein	-	1e-23	At1g69220	SIK1	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.5	98.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	3e-96	353	PtpAffx.205357.1.S1_at	pmrna10606	hypothetical protein	-	9e-34	At4g02630	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.34	3e-16	87	PtpAffx.204618.1.S1_at	pmrna9072	hypothetical protein	-	1e-87	At4g34500	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.34	3e-16	87	PtpAffx.204618.1.S1_s_at	pmrna9072	hypothetical protein	-	1e-87	At4g34500	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	2e-14	81	PtpAffx.215872.1.S1_at	pmrna30315	hypothetical protein	-	4e-86	At1g09440	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	2e-7	57	PtpAffx.104038.1.S1_at	CF235865	hypothetical protein	-	1e-1	At4g02630	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-6	54	PtpAffx.13670.1.S1_at	CV265271	-	-	1e-27	At3g24550	ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	6e-5	50	Ptp.713.1.S1_at	CK087922	hypothetical protein	-	6e-44	At1g01540	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-4	48	PtpAffx.224433.1.S1_at	pmrna42956	hypothetical protein	-	1e-77	At4g34440	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-4	48	Ptp.5352.1.S1_at	CV270717	hypothetical protein	-	2e-44	At2g35620	FEI2 (FEI 2)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	2e-41	171	Arabidopsis thaliana	At4g02630	828217	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	7e-57	222	Glycine max	Gma.1097.1.S1_at	BM092770	-	-	5e-17	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.23	4e-16	85	Hordeum vulgare	Contig13522_at	Contig13522	-	-	4e-17	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.28	5e-40	167	Oryza sativa	Os04g0430000	AK100142.1	-	Ser Thr specific protein kinase-like protein	7e-8	At4g01330	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	3e-12	73	Triticum aestivum	Ta.23261.1.S1_at	BF429193	-	-	2e-15	At3g59110	protein kinase family protein	C.G.	S.X.	Please select
0.30	6e-85	313	Vitis vinifera	1610530_at	CB971103	hypothetical protein LOC100243696	-	7e-34	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.21	3e-7	56	Zea mays	Zm.14391.1.A1_at	CA998702	hypothetical protein LOC100273626	-	1e-7	At4g02630	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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