CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.221137.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.221137.1.S1_at pmrna37769 hypothetical protein - 6e-109 At1g47550 unknown protein S.X. H.G.
0.63 88.1 PtpAffx.130346.1.S1_at CN523190 hypothetical protein - 2e-33 At2g26430 RCY1 (ARGININE-RICH CYCLIN 1) S.X. H.G.
0.63 88.1 PtpAffx.156707.1.S1_s_at BU873655 hypothetical protein - 4e-4 At2g03110 RNA binding / nucleic acid binding S.X. H.G.
0.54 80.8 PtpAffx.134857.2.S1_at CN523812 hypothetical protein - 2e-24 At2g32080 PUR ALPHA-1 S.X. H.G.
0.52 79.4 PtpAffx.221779.1.S1_s_at pmrna38830 histone acetyltransferase - 1e-53 At3g54610 GCN5 S.X. H.G.
0.50 78.6 PtpAffx.151338.1.S1_at DN500589 hypothetical protein - 3e-20 At5g56290 PEX5 (PEROXIN 5) S.X. H.G.
0.49 75.7 PtpAffx.100628.1.S1_s_at CF232037 hypothetical protein - 2e+0 At2g38350 unknown protein S.X. H.G.
0.48 75.4 PtpAffx.132468.1.S1_s_at DN498520 - - 4e-1 At3g12140 emsy N terminus domain-containing protein / ENT domain-containing protein S.X. H.G.
0.48 75.4 PtpAffx.3977.1.S1_s_at CA821307 hypothetical protein - 2e-18 At5g52040 ATRSP41 S.X. H.G.
0.45 72.3 PtpAffx.61544.1.A1_at CA931045 hypothetical protein - 4e-19 At3g59380 FTA (FARNESYLTRANSFERASE A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 95.1 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0 92.9 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2 89.3 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 2e-106 387 PtpAffx.202089.1.S1_s_at pmrna4162 hypothetical protein - 7e-3 At1g47550 unknown protein C.G. S.X.
0.35 6e-88 325 PtpAffx.202088.1.S1_at pmrna4161 hypothetical protein - 1e-23 At1g47550 unknown protein C.G. S.X.
0.02 2e-1 38 PtpAffx.213662.1.S1_at pmrna26676 hypothetical protein - 1e-29 At5g01590 unknown protein C.G. S.X.
0.01 2e-1 38 PtpAffx.211171.1.S1_at pmrna21961 hypothetical protein - 4e-7 At4g38070 bHLH family protein C.G. S.X.
0.02 2e-1 38 PtpAffx.115107.1.A1_at CV232486 hypothetical protein - 2e+0 At1g22480 plastocyanin-like domain-containing protein C.G. S.X.
0.01 9e-1 36 PtpAffx.150105.1.S1_at BU878970 hypothetical protein - 6e-12 At2g22660 - C.G. S.X.
0.02 9e-1 36 Ptp.3765.1.S1_at AI162530 hypothetical protein - 2e-19 At3g07810 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative C.G. S.X.
0.02 3e+0 34 PtpAffx.56933.1.A1_s_at CV245389 - - 7e-3 At2g22400 NOL1/NOP2/sun family protein C.G. S.X.
0.02 3e+0 34 PtpAffx.56933.1.A1_at CV245389 - - 7e-3 At2g22400 NOL1/NOP2/sun family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 6e-109 395 Arabidopsis thaliana At1g47550 841164 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane, exocyst;MFPOBA - - - C.G. S.X.
0.04 6e-2 40 Glycine max GmaAffx.46074.1.S1_at BM085710 - - 1e-2 At1g19000 myb family transcription factor C.G. S.X.
0.19 5e-9 61 Hordeum vulgare EBro07_SQ001_D09_at EBro07_SQ001_D09 - - 4e-11 At1g47560 unknown protein C.G. S.X.
0.23 2e-17 91 Oryza sativa Os03g0625700 AY224571.1 - Conserved hypothetical protein 4e-14 At1g47550 unknown protein C.G. S.X.
0.03 4e-5 50 Triticum aestivum Ta.27927.2.S1_at CA653532 - - 6e-23 At1g47550 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1622114_at CD798978 hypothetical protein LOC100265981 - 6e-27 At2g45200 GOS12 (GOLGI SNARE 12) C.G. S.X.
0.02 2e-2 40 Zea mays Zm.14703.2.A1_a_at CF634914 hypothetical protein LOC100194060 - 3e-7 At5g66650 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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