Gene omics information

Query gene ID	PtpAffx.221080.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	82.2	PtpAffx.221080.1.S1_at	pmrna37660	hypothetical protein	-	2e+0	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.2849.2.A1_at	DN484673	-	-	6e+0	At3g61450	SYP73 (SYNTAXIN OF PLANTS 73)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.220777.1.S1_s_at	pmrna37206	hypothetical protein	-	2e+0	At5g55970	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.43347.1.A1_at	CV275802	-	-	2e+0	At3g10950	60S ribosomal protein L37a (RPL37aB)	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.217816.1.S1_at	pmrna33230	hypothetical protein	-	3e-3	At5g50700	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.153695.1.A1_at	CV246282	-	-	2e+0	At2g32020	GCN5-related N-acetyltransferase (GNAT) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.0	99.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
10.0	98.9	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.7	97.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9	95.1	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2313	PtpAffx.221080.1.S1_s_at	pmrna37660	hypothetical protein	-	2e+0	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.82	0	946	PtpAffx.221078.1.S1_at	pmrna37657	hypothetical protein	-	2e+0	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.52	1e-119	430	PtpAffx.22684.1.S1_at	DN491476	-	-	9e-2	At2g11462	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	5e-30	133	Ptp.7515.1.S1_at	CK109405	-	-	2e+0	At4g15400	transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	5e-30	133	Ptp.7515.1.S1_s_at	CK109405	-	-	2e+0	At4g15400	transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	6e-11	69	PtpAffx.75566.2.A1_a_at	CV263115	-	-	1e+0	At1g55950	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	4e-9	63	PtpAffx.221083.1.S1_at	pmrna37664	hypothetical protein	-	3e-1	At5g08090	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.205247.1.S1_at	pmrna10400	hypothetical protein	-	1e-8	At5g23210	SCPL34	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.218302.1.S1_at	pmrna33869	hypothetical protein	-	1e+0	At1g17200	integral membrane family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g53730	835454	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	9e-7	56	Glycine max	GmaAffx.82603.1.S1_at	BG510745	-	-	2e-1	At4g10950	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Hordeum vulgare	Contig6014_at	Contig6014	-	-	5e+0	At5g38540	jacalin lectin family protein	C.G.	S.X.	Please select
0.01	1e+0	36	Oryza sativa	Os09g0447100	AK110679.1	-	Conserved hypothetical protein	3e+0	At2g22000	PROPEP6 (Elicitor peptide 6 precursor)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-4	48	Triticum aestivum	Ta.29422.1.S1_at	BJ312582	-	-	1e+0	At1g66260	RNA and export factor-binding protein, putative	C.G.	S.X.	Please select
0.03	2e-1	36	Vitis vinifera	1616723_at	CF213419	hypothetical protein LOC100249635 /// hypothetical protein LOC100254753	-	2e-1	At5g44265	lipid binding	C.G.	S.X.	Please select
0.02	3e-1	36	Zea mays	Zm.12837.1.A1_at	AY106006.1	-	-	2e+0	At1g72170	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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