Gene omics information

Query gene ID	PtpAffx.220851.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	84.9	PtpAffx.220851.1.S1_at	pmrna37301	hypothetical protein	-	7e-9	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.223533.1.S1_at	pmrna41583	hypothetical protein	-	9e-1	At2g42460	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.32922.1.S1_at	CK095264	-	-	3e-2	At4g02080	ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.60638.1.A1_at	CK095398	-	-	2e-1	At3g02190	60S ribosomal protein L39 (RPL39B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.221338.1.S1_at	pmrna38163	-	-	2e-5	At5g47850	CCR4 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.225217.1.S1_at	pmrna44400	hypothetical protein	-	2e-3	At3g23010	AtRLP36 (Receptor Like Protein 36)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.2	99.0	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
8.1	98.5	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.7	97.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0	96.6	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.0	96.6	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.8	96.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.4	95.9	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	4e-134	478	PtpAffx.223154.1.S1_at	pmrna41014	hypothetical protein	-	5e-3	At1g29160	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.41	9e-86	317	PtpAffx.210962.1.S1_s_at	pmrna21538	hypothetical protein	-	3e-2	At5g56600	PRF3 (PROFILIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.45	3e-52	206	PtpAffx.212128.1.S1_x_at	pmrna23787	hypothetical protein	-	1e-1	At2g39445	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	4e-51	202	PtpAffx.202153.1.S1_s_at	pmrna4305	hypothetical protein	-	2e-1	At2g39445	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	3e-42	173	PtpAffx.1303.1.S1_at	CV232657	hypothetical protein	-	2e-89	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	3e-42	173	PtpAffx.1303.1.S1_a_at	CV232657	hypothetical protein	-	2e-89	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	8e-31	135	PtpAffx.212130.1.S1_x_at	pmrna23790	hypothetical protein	-	6e-1	At3g13677	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	8e-31	135	PtpAffx.212130.1.S1_at	pmrna23790	hypothetical protein	-	6e-1	At3g13677	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	7e-25	115	PtpAffx.212326.1.S1_at	pmrna24170	hypothetical protein	-	4e-1	At2g21530	forkhead-associated domain-containing protein / FHA domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	7e-9	61	Arabidopsis thaliana	At3g59990	825169	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	Encodes a MAP2 like methionine aminopeptidase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	4e-8	59	Glycine max	Gma.4154.1.S1_a_at	BE823844	-	-	1e-169	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please select
0.06	1e-11	69	Hordeum vulgare	Contig3631_s_at	Contig3631	-	-	2e-47	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please select
0.04	1e-14	81	Oryza sativa	Os12g0628500	AK122063.1	-	Methionine aminopeptidase-like protein	2e-29	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-2	40	Triticum aestivum	Ta.4127.3.S1_a_at	CA729644	-	-	4e+0	At3g29780	RALFL27 (ralf-like 27)	C.G.	S.X.	Please select
0.04	7e-3	40	Vitis vinifera	1614311_at	CF516097	hypothetical protein LOC100264243	-	2e-6	At1g15780	unknown protein	C.G.	S.X.	Please select
0.04	1e-8	59	Zea mays	Zm.4989.1.A1_at	AI932047	hypothetical protein LOC100191629	-	1e-43	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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