CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.220848.1.S1_x_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 83.9 PtpAffx.220848.1.S1_x_at pmrna37298 hypothetical protein - 2e+0 At5g04120 phosphoglycerate/bisphosphoglycerate mutase family protein S.X. H.G.
0.34 58.3 Ptp.5850.2.A1_at CV253282 - - 1e-22 At4g18100 60S ribosomal protein L32 (RPL32A) S.X. H.G.
0.32 55.2 PtpAffx.130551.1.S1_at DN501005 hypothetical protein - 2e-8 At1g67830 ATFXG1 (alpha-fucosidase 1) S.X. H.G.
0.24 41.8 PtpAffx.5132.2.A1_at CV260456 hypothetical protein - 1e-7 At1g22200 unknown protein S.X. H.G.
0.15 25.3 PtpAffx.202825.1.S1_at pmrna5597 - - 4e-1 At5g16850 ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) S.X. H.G.
0.13 21.6 PtpAffx.25334.2.S1_at CV262387 hypothetical protein - 1e+1 At5g44574 unknown protein S.X. H.G.
0.13 21.6 PtpAffx.207353.1.S1_s_at pmrna14591 hypothetical protein - 3e-50 At5g49555 amine oxidase-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.6 99.2 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.5 97.8 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.2 96.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.7 96.3 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8 94.9 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1647 PtpAffx.220848.1.S1_at pmrna37298 hypothetical protein - 2e+0 At5g04120 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.54 3e-166 585 PtpAffx.222143.1.S1_at pmrna39379 hypothetical protein - 9e-3 At4g37730 AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7) C.G. S.X.
0.71 2e-152 539 PtpAffx.219249.1.S1_s_at pmrna35108 hypothetical protein - 2e+0 At5g36240 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.49 1e-137 490 PtpAffx.32570.1.S1_at DN494012 - - 3e-1 At4g37730 AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7) C.G. S.X.
0.54 1e-137 490 PtpAffx.217062.1.S1_x_at pmrna32196 hypothetical protein - 4e-1 At3g56730 unknown protein C.G. S.X.
0.54 1e-137 490 PtpAffx.217062.1.S1_at pmrna32196 hypothetical protein - 4e-1 At3g56730 unknown protein C.G. S.X.
0.62 5e-137 488 PtpAffx.97176.1.A1_at CK096637 hypothetical protein - 2e+0 At5g66930 unknown protein C.G. S.X.
0.53 6e-115 414 PtpAffx.3392.1.S1_at BU895959 hypothetical protein - 8e-1 At3g57910 D111/G-patch domain-containing protein C.G. S.X.
0.69 4e-110 398 PtpAffx.219467.1.S1_at pmrna35391 hypothetical protein - 1e+0 At1g58080 ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At5g04120 830290 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA - - - C.G. S.X.
0.03 6e-4 46 Glycine max GmaAffx.72405.1.S1_at BF597599 - - 5e+0 At5g42630 ATS (ABERRANT TESTA SHAPE) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare rbags5f04_at rbags5f04 - - 2e+0 At3g61678 unknown protein C.G. S.X.
Os12g0434900 0.03 3e+0 Oryza sativa Os10g0206700 9638.m01230 - - 1e-2 At1g76185 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.3182.1.S1_at BJ224799 - - 1e+1 At5g05380 PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3) C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1612113_at CB008783 - - 1e+0 At5g09978 PEP7 (ELICITOR PEPTIDE 7 PRECURSOR) C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.1085.1.A1_at AW018111 zinc finger, C3HC4 type family protein - 3e+0 At1g67035 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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