Gene omics information

Query gene ID	PtpAffx.220765.1.S1_s_at
Gene name	hypothetical protein /// cyclic nucleotide-gated channel
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.65	88.6	PtpAffx.220765.1.S1_s_at	pmrna37189	hypothetical protein /// cyclic nucleotide-gated channel	-	4e-12	At4g30360	ATCNGC17	S.X.	H.G.	Please selecteFP Browser (expression)
0.70	91.7	PtpAffx.200755.1.S1_s_at	pmrna1462	hypothetical protein	-	2e-46	At1g07380	ceramidase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.52	79.4	Ptp.6370.3.S1_a_at	CK091400	hypothetical protein	-	6e+0	At3g23635	RTFL13 (ROTUNDIFOLIA LIKE 13)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.71184.1.S1_s_at	BU821746	hypothetical protein	-	7e-23	At5g16300	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.155942.1.S1_at	CF235846	hypothetical protein	-	8e-19	At4g31490	coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.204155.1.S1_s_at	pmrna8187	hypothetical protein	-	2e+0	At5g07790	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.45	72.3	Ptp.2530.2.S1_s_at	DN490660	hypothetical protein	-	2e-6	At1g80490	TPR1 (TOPLESS-RELATED 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.219510.1.S1_at	pmrna35453	hypothetical protein	-	1e-9	At1g19870	iqd32 (IQ-domain 32)	S.X.	H.G.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.222812.1.S1_s_at	pmrna40480	hypothetical protein	-	7e-35	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.124616.1.S1_s_at	CK099809	hypothetical protein	-	4e-134	At3g02530	chaperonin, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.9	98.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.4	98.2	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.1	97.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.3	96.9	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	841	PtpAffx.220765.1.S1_at	pmrna37189	cyclic nucleotide-gated channel	-	4e-12	At4g30360	ATCNGC17	C.G.	S.X.	Please selecteFP Browser (expression)
0.34	0	779	PtpAffx.225079.1.S1_at	pmrna44172	hypothetical protein	-	5e-24	At4g30360	ATCNGC17	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	1e-25	117	PtpAffx.225069.1.S1_at	pmrna44154	hypothetical protein	-	6e-24	At2g24610	ATCNGC14	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	4e-19	95	PtpAffx.224534.1.S1_at	pmrna43154	hypothetical protein	-	5e-27	At4g30360	ATCNGC17	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	2e-11	69	PtpAffx.225114.1.S1_at	pmrna44218	-	-	2e-22	At4g30360	ATCNGC17	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	2e-11	69	PtpAffx.225114.1.S1_x_at	pmrna44218	-	-	2e-22	At4g30360	ATCNGC17	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	5e-3	42	PtpAffx.224532.1.S1_at	pmrna43152	-	-	6e-14	At4g30360	ATCNGC17	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-2	40	PtpAffx.75359.2.A1_at	DN491371	hypothetical protein	-	7e-12	At4g14790	ATSUV3	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-1	36	PtpAffx.206414.1.S1_at	pmrna12742	hypothetical protein	-	1e+0	At3g56070	ROC2 (ROTAMASE CYCLOPHILIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-12	71	Arabidopsis thaliana	At4g30360	829159	ATCNGC17	member of Cyclic nucleotide gated channel family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	8e-8	57	Glycine max	GmaAffx.33421.1.S1_at	BU547719	-	-	5e+0	At5g44580	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Hordeum vulgare	HU05N01u_at	HU05N01u	-	-	1e+0	At5g19830	aminoacyl-tRNA hydrolase	C.G.	S.X.	Please select
0.04	3e-2	40	Oryza sativa	Os06g0188000	AK066305.1	-	Cyclic nucleotide-gated channel C (Fragment)	1e-11	At4g30360	ATCNGC17	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-1	34	Triticum aestivum	TaAffx.82110.1.S1_at	CA677442	-	-	6e-1	At4g17245	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1622195_at	CB969266	hypothetical protein LOC100248937	-	3e-15	At4g07990	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	Zm.7687.1.A1_at	BM072867	hypothetical protein LOC100279009	-	7e-2	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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