CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.220436.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.69 91.5 PtpAffx.220436.1.S1_at pmrna36827 hypothetical protein - 2e+0 At5g18250 unknown protein S.X. H.G.
0.45 72.3 PtpAffx.216207.1.S1_at pmrna30852 hypothetical protein - 7e-1 At1g01840 unknown protein S.X. H.G.
0.41 67.7 PtpAffx.218919.1.S1_at pmrna34676 hypothetical protein - 2e+0 At1g20790 F-box family protein S.X. H.G.
0.38 63.7 PtpAffx.38005.1.A1_at CV230195 - - 3e-1 At3g49645 unknown protein S.X. H.G.
0.37 62.3 PtpAffx.200707.1.S1_at pmrna1363 hypothetical protein - 7e-1 At5g03810 carboxylesterase/ hydrolase, acting on ester bonds / lipase S.X. H.G.
0.36 61.6 PtpAffx.148281.1.S1_at CX655665 hypothetical protein - 2e-10 At3g04480 endoribonuclease S.X. H.G.
0.34 58.3 Ptp.2650.1.S1_at DN495004 - - 2e-1 At1g56045 ribosomal protein L41 family protein S.X. H.G.
0.33 57.5 PtpAffx.210543.1.S1_at pmrna20679 hypothetical protein - 3e+0 At3g56490 zinc-binding protein, putative / protein kinase C inhibitor, putative S.X. H.G.
0.31 53.7 PtpAffx.205324.1.S1_at pmrna10548 hypothetical protein - 1e-1 At4g37110 protein binding / zinc ion binding S.X. H.G.
0.29 50.5 Ptp.5452.3.A1_at CK088841 hypothetical protein - 5e+0 At2g22807 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
45.5 100.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.4 98.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.8 98.4 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2 95.6 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0 88.0 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-3 44 PtpAffx.216764.1.S1_at pmrna31750 hypothetical protein - 8e+0 At5g40620 unknown protein C.G. S.X.
0.04 9e-3 42 PtpAffx.215694.1.S1_at pmrna30044 hypothetical protein - 3e+0 At1g06980 unknown protein C.G. S.X.
0.03 1e-1 38 PtpAffx.219933.1.S1_at pmrna36101 hypothetical protein - 2e+0 At5g23410 - C.G. S.X.
0.04 1e-1 38 PtpAffx.216509.1.S1_at pmrna31333 hypothetical protein - 7e+0 At1g71780 unknown protein C.G. S.X.
0.01 5e-1 36 PtpAffx.223227.1.S1_at pmrna41108 hypothetical protein - 4e+0 At3g21870 CYCP2 C.G. S.X.
0.01 5e-1 36 PtpAffx.223146.1.S1_at pmrna41004 hypothetical protein - 9e-1 At5g49700 DNA-binding protein-related C.G. S.X.
0.02 5e-1 36 PtpAffx.219949.1.S1_at pmrna36120 hypothetical protein - 2e+0 At2g38540 LP1 C.G. S.X.
0.02 5e-1 36 PtpAffx.216697.1.S1_at pmrna31645 hypothetical protein - 3e+1 At5g28660 - C.G. S.X.
0.03 5e-1 36 PtpAffx.128286.1.A1_at CK096773 - - 4e-1 At5g46020 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At5g18250 831943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P - - - C.G. S.X.
0.03 1e-1 38 Glycine max PsAffx.psHB015xO10f_at PsAffx.psHB015xO10f - - 7e-2 At4g19270 unknown protein C.G. S.X.
0.03 1e-2 40 Hordeum vulgare Contig19638_at Contig19638 - - 3e-4 At1g62240 unknown protein C.G. S.X.
0.03 5e-2 40 Oryza sativa OsAffx.11634.2.S1_x_at - - - 0 C.G. S.X.
0.04 1e-1 38 Triticum aestivum TaAffx.57986.1.S1_at CA623338 - - 5e-1 At4g19270 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1617913_at CF373405 hypothetical protein LOC100262685 - 6e+0 At3g47341 unknown protein C.G. S.X.
0.03 4e-2 38 Zea mays Zm.9719.1.A1_at BM332935 hypothetical protein LOC100273981 - 1e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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