CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.220430.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.96 99.8 PtpAffx.220430.1.S1_at pmrna36821 - - 9e-1 At4g02250 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.33 57.5 PtpAffx.86591.1.S1_at DN498052 - - 1e-1 At3g46040 RPS15AD (ribosomal protein S15A D) S.X. H.G.
0.21 36.5 Ptp.6486.1.S1_s_at CV249938 actin 1 - 0 At1g49240 ACT8 (ACTIN 8) S.X. H.G.
0.20 34.6 PtpAffx.212653.1.S1_at pmrna24761 hypothetical protein - 7e-4 At5g08130 BIM1 S.X. H.G.
0.20 34.6 Ptp.1497.2.S1_x_at CV243508 s-adenosylmethionine synthetase 5 - 3e-179 At1g02500 SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) S.X. H.G.
0.19 32.7 PtpAffx.1258.1.S1_s_at CV242350 actin 1 - 5e-138 At5g09810 ACT7 (ACTIN 7) S.X. H.G.
0.15 25.3 PtpAffx.222280.1.S1_s_at pmrna39594 hypothetical protein - 2e-5 At2g43410 FPA S.X. H.G.
0.14 23.5 PtpAffx.200880.1.S1_at pmrna1726 hypothetical protein - 9e-41 At5g12260 - S.X. H.G.
0.14 23.5 PtpAffx.200299.1.S1_at pmrna591 hypothetical protein - 1e-50 At3g47630 - S.X. H.G.
0.13 21.6 PtpAffx.891.14.S1_at CV228832 - - 8e-2 At3g50550 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 97.4 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.2 96.8 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6 96.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e-3 42 PtpAffx.218846.1.S1_at pmrna34586 hypothetical protein - 4e+0 At5g07520 GRP18 (GLYCINE-RICH PROTEIN 18) C.G. S.X.
0.03 3e-1 36 PtpAffx.221928.1.S1_at pmrna39047 hypothetical protein - 1e+0 At1g72080 unknown protein C.G. S.X.
0.03 3e-1 36 PtpAffx.219320.1.S1_at pmrna35205 hypothetical protein - 8e+0 At2g15050 LTP C.G. S.X.
0.01 1e+0 34 PtpAffx.223036.1.S1_at pmrna40823 hypothetical protein - 2e+1 At3g57540 remorin family protein C.G. S.X.
0.02 1e+0 34 PtpAffx.222188.1.S1_at pmrna39441 hypothetical protein - 1e+1 At2g23400 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative C.G. S.X.
0.02 1e+0 34 PtpAffx.219406.1.S1_at pmrna35327 hypothetical protein - 1e+1 At5g13330 Rap2.6L (related to AP2 6L) C.G. S.X.
0.03 1e+0 34 PtpAffx.218905.1.S1_at pmrna34661 hypothetical protein - 2e+0 At1g33265 unknown protein C.G. S.X.
0.01 1e+0 34 PtpAffx.216702.1.S1_at pmrna31653 ABC transporter family protein - 2e-1 At4g09420 disease resistance protein (TIR-NBS class), putative C.G. S.X.
0.03 1e+0 34 PtpAffx.216123.1.S1_at pmrna30709 hypothetical protein - 3e+1 At4g21830 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-1 34 Arabidopsis thaliana At4g02250 827589 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.03 3e-1 36 Glycine max PsAffx.C190000012_at PsAffx.C190000012 - - 7e+0 At4g14740 phosphoinositide binding C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig8323_at Contig8323 - - 3e+0 Atmg00890 - C.G. S.X.
0.03 2e+0 34 Oryza sativa OsAffx.23978.1.S1_at - - - 0 C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.7750.1.S1_at CA651213 - - 8e-1 At2g30960 unknown protein C.G. S.X.
0.04 7e-2 36 Vitis vinifera 1620568_at BQ799876 - - 4e-15 At1g72330 ALAAT2 (ALANINE AMINOTRANSFERASE 2) C.G. S.X.
0.04 6e+0 30 Zea mays Zm.9566.1.S1_at AF332180.1 beta-expansin 7 - 6e-1 At3g49630 2-oxoacid-dependent oxidase, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage