Gene omics information

Query gene ID PtpAffx.220171.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.98100.0PtpAffx.220171.1.S1_atpmrna36525hypothetical protein-1e+0At1g55220unknown proteinS.X.H.G.
0.2543.6PtpAffx.200550.1.S1_atpmrna1092hypothetical protein-4e-14At1g71100RSW10 (RADIAL SWELLING 10)S.X.H.G.
0.2136.5Ptp.89.1.S1_s_atCV236988hypothetical protein-4e-1At2g02510unknown proteinS.X.H.G.
0.2034.6PtpAffx.118825.1.S1_atCX172872hypothetical protein-1e-3At2g21870unknown proteinS.X.H.G.
0.1830.8PtpAffx.75716.1.A1_s_atCV260374hypothetical protein-2e-39At5g20090unknown proteinS.X.H.G.
0.1729.1Ptp.2108.1.S1_atCV264910hypothetical protein-1e-47At1g65290mtACP2 (mitochondrial acyl carrier protein 2)S.X.H.G.
0.1525.3PtpAffx.108502.2.S1_atCX169224hypothetical protein-9e-33At3g48030hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.1219.6Ptp.2984.1.A1_atDN488110--4e+1At5g61130PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1)S.X.H.G.
0.1118.1Ptp.3699.1.S1_atCK092948hypothetical protein-1e-48At5g64670ribosomal protein L15 family proteinS.X.H.G.
0.1016.3Ptp.4385.1.S1_atCV247957hypothetical protein-5e-34At5g18800NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
20.599.8GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
8.798.6GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
8.598.6GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
6.998.0GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
6.797.9GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.397.7GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
5.597.1GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
4.996.5GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.596.1GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
2.892.1GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e-240PtpAffx.217234.1.S1_atpmrna32418hypothetical protein-3e+1At4g35490MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11)C.G.S.X.
0.022e+034PtpAffx.76061.1.A1_atCV245469hypothetical protein-5e-1At5g19870unknown proteinC.G.S.X.
0.012e+034PtpAffx.26405.1.S1_atCV264748f-box family protein /// hypothetical protein /// f-box family protein-2e-23At1g43640AtTLP5 (TUBBY LIKE PROTEIN 5)C.G.S.X.
0.042e+034PtpAffx.219905.1.S1_atpmrna36068hypothetical protein-5e-1At3g20390endoribonuclease L-PSP family proteinC.G.S.X.
0.022e+034PtpAffx.216338.1.S1_atpmrna31052hypothetical protein-2e+0At5g05657-C.G.S.X.
0.042e+034PtpAffx.216071.1.S1_atpmrna30632--2e+1At5g24370invertase/pectin methylesterase inhibitor family proteinC.G.S.X.
0.022e+034PtpAffx.208301.1.S1_atpmrna16513--5e-19At1g60230radical SAM domain-containing proteinC.G.S.X.
0.027e+032PtpAffx.2998.1.S1_atCK094434--3e-1At5g64905PROPEP3 (Elicitor peptide 3 precursor)C.G.S.X.
0.027e+032PtpAffx.26405.3.A1_atBU830440f-box family protein-5e-10At1g25280AtTLP10 (TUBBY LIKE PROTEIN 10)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e+034Arabidopsis thalianaAt1g55220841965unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P---C.G.S.X.
0.042e+034Glycine maxPsAffx.psHB013xA09f_atPsAffx.psHB013xA09f--1e-3At5g03030DNAJ heat shock N-terminal domain-containing proteinC.G.S.X.
0.032e-136Hordeum vulgareContig650_atContig650--5e-34At2g3760060S ribosomal protein L36 (RPL36A)C.G.S.X.
0.022e-138Oryza sativaOsAffx.4968.1.S1_at---0C.G.S.X.
0.041e+034Triticum aestivumTaAffx.79657.1.S1_atCA711220--4e-3At1g78370ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)C.G.S.X.
0.032e+128Vitis vinifera1622530_atBQ800497hypothetical protein LOC100249036-9e-1At4g19250kelch repeat-containing proteinC.G.S.X.
0.032e+032Zea maysZm.4387.1.A1_atCF627716hypothetical protein LOC100191315-4e+0At5g40590DC1 domain-containing proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage