Gene omics information

Query gene ID PtpAffx.220057.1.S1_x_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.220057.1.S1_x_atpmrna36333--3e-2At1g27710glycine-rich proteinS.X.H.G.
0.0711.6PtpAffx.10046.1.S1_atCV232425hypothetical protein-8e-4At1g27000bZIP family transcription factorS.X.H.G.
0.069.8Ptp.3364.1.S1_atBU814868hypothetical protein-2e-17At2g41160ubiquitin-associated (UBA)/TS-N domain-containing proteinS.X.H.G.
0.035.2PtpAffx.23813.2.S1_atDN501818hypothetical protein-5e-25At5g55990CBL2 (CALCINEURIN B-LIKE 2)S.X.H.G.
0.023.6Ptp.3001.2.A1_s_atBP937097hypothetical protein-1e-3At2g44520COX10 (cytochrome c oxidase 10)S.X.H.G.
0.023.6PtpAffx.100713.1.S1_a_atAJ774230hypothetical protein-8e-39At3g49100signal recognition particle 9 kDa protein, putative / SRP9, putativeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.398.2GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
6.697.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.596.1GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
4.295.6GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
3.594.3GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.393.7GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
2.992.5GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.992.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
2.992.5GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.134e-33143Ptp.3457.1.S1_atBU894886--6e-1At4g33660unknown proteinC.G.S.X.
0.032e-138PtpAffx.204298.1.S1_atpmrna8452hypothetical protein-9e+0Atmg00210-C.G.S.X.
0.037e-136PtpAffx.30500.1.A1_atCV273301hypothetical protein-1e+0At5g46730glycine-rich proteinC.G.S.X.
0.027e-136PtpAffx.213435.1.S1_atpmrna26268hypothetical protein-6e-23At1g08370DCP1 (decapping 1)C.G.S.X.
0.027e-136PtpAffx.201784.1.S1_atpmrna3559hypothetical protein-6e-7At5g42440protein kinase family proteinC.G.S.X.
0.027e-136PtpAffx.18581.1.A1_atCV241982--3e-1At5g46730glycine-rich proteinC.G.S.X.
0.047e-136Ptp.3457.2.A1_atDN492884--2e+0At5g48820ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE)C.G.S.X.
0.023e+034PtpAffx.9525.1.S1_atCV233315hypothetical protein-1e-4At4g34150C2 domain-containing proteinC.G.S.X.
0.033e+034PtpAffx.88450.1.A1_atCV232189hypothetical protein-1e-7At1g74230GR-RBP5 (glycine-rich RNA-binding protein 5)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.053e-240Arabidopsis thalianaAt1g27710839664glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA---C.G.S.X.
0.042e-138Glycine maxGmaAffx.85497.1.S1_atBG508375--3e-1At2g05440glycine-rich proteinC.G.S.X.
0.034e+032Hordeum vulgareContig16541_atContig16541--5e+0At1g25682cell cycle control protein-relatedC.G.S.X.
0.046e-240Oryza sativaOsAffx.7997.1.S1_at---0C.G.S.X.
0.035e-136Triticum aestivumTa.3914.2.A1_x_atBJ266729--8e-1At5g66260auxin-responsive protein, putativeC.G.S.X.
0.042e+032Vitis vinifera1617526_s_atCB972978hypothetical protein LOC100250396-8e-1At2g10920unknown proteinC.G.S.X.
0.028e-134Zea maysZm.19050.1.S1_atCA829470hypothetical protein LOC100274252-5e+0At5g01880zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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