Gene omics information

Query gene ID PtpAffx.219999.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.3964.6PtpAffx.219999.1.S1_atpmrna36231hypothetical protein-9e-6At5g18170GDH1 (GLUTAMATE DEHYDROGENASE 1)S.X.H.G.
0.2136.5PtpAffx.24667.1.A1_atCV251328--1e+0At3g30220unknown proteinS.X.H.G.
0.2136.5PtpAffx.11967.2.S1_atCV244989--6e-8At1g19130-S.X.H.G.
0.1219.6PtpAffx.201798.1.S1_atpmrna3581hypothetical protein-7e-1At4g23030MATE efflux protein-relatedS.X.H.G.
0.1118.1PtpAffx.223404.1.S1_atpmrna41390hypothetical protein-8e-1At3g25050XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)S.X.H.G.
0.0711.6PtpAffx.135992.1.A1_atCK094213--3e+0At5g56760ATSERAT1S.X.H.G.
0.0711.6PtpAffx.216965.1.S1_atpmrna32048hypothetical protein-2e+0At3g14452unknown proteinS.X.H.G.
0.035.2PtpAffx.212501.1.S1_atpmrna24485hypothetical protein-8e-3At1g51620protein kinase family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
19.899.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
13.799.4GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.097.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
3.794.7GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
3.794.7GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
2.791.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
2.691.3GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
2.490.4GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.289.3GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.286e-1477PtpAffx.152340.1.S1_atCN522546hypothetical protein-1e-41At5g07440GDH2 (GLUTAMATE DEHYDROGENASE 2)C.G.S.X.
0.286e-1477PtpAffx.152340.1.S1_s_atCN522546hypothetical protein-1e-41At5g07440GDH2 (GLUTAMATE DEHYDROGENASE 2)C.G.S.X.
0.113e-961PtpAffx.211070.1.S1_atpmrna21745hypothetical protein-4e-52At5g18170GDH1 (GLUTAMATE DEHYDROGENASE 1)C.G.S.X.
0.233e-961PtpAffx.20895.2.S1_atBU892021hypothetical protein-6e-83At3g03910GDH3 (GLUTAMATE DEHYDROGENASE 3)C.G.S.X.
0.075e-857PtpAffx.212222.1.S1_atpmrna23959hypothetical protein-9e-121At5g18170GDH1 (GLUTAMATE DEHYDROGENASE 1)C.G.S.X.
0.198e-754PtpAffx.20895.1.S1_s_atBU823541hypothetical protein-2e-34At5g18170GDH1 (GLUTAMATE DEHYDROGENASE 1)C.G.S.X.
0.012e-136PtpAffx.211100.1.S1_atpmrna21804hypothetical protein-2e-52At3g03710RIF10 (resistant to inhibition with FSM 10)C.G.S.X.
0.033e+032PtpAffx.92312.1.S1_atCK107035GRAS family transcription factor-9e-2At2g41180sigA-binding protein-relatedC.G.S.X.
0.033e+032PtpAffx.82455.1.A1_atCV245479hypothetical protein-7e-3At2g27800-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.119e-650Arabidopsis thalianaAt5g18170831935GDH1 (GLUTAMATE DEHYDROGENASE 1)Encodes the 43 kDa alpha-subunit of the glutamate dehydrogenase with a putative mitochondrial transit polypeptide and NAD(H)- and alpha-ketoglutarate-binding domains. Mitochondrial localization confirmed by subcellular fractionation. Combines in several ratios with GDH2 protein (GDH-beta) to form seven isoenzymes. Catalyzes the cleavage of glycine residues. May be involved in ammonia assimilation under conditions of inorganic nitrogen excess. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.---C.G.S.X.
0.484e-1271Glycine maxGmaAffx.18827.1.S1_atBM528858--5e-27At3g03910GDH3 (GLUTAMATE DEHYDROGENASE 3)C.G.S.X.
0.073e-1063Hordeum vulgareContig6870_atContig6870--6e-57At5g18170GDH1 (GLUTAMATE DEHYDROGENASE 1)C.G.S.X.
0.081e-1583Oryza sativaOs02g0650900AK103028.1-Glutamate dehydrogenase 2 (EC 1.4.1.3) (GDH 2)3e-34At5g07440GDH2 (GLUTAMATE DEHYDROGENASE 2)C.G.S.X.
0.071e-1169Triticum aestivumTa.5091.3.S1_x_atCK197746--1e-30At5g18170GDH1 (GLUTAMATE DEHYDROGENASE 1)C.G.S.X.
0.182e-1063Vitis vinifera1612389_atX86924.1glutamate dehydrogenase-2e-44At5g07440GDH2 (GLUTAMATE DEHYDROGENASE 2)C.G.S.X.
0.144e-340Zea maysZm.44.1.S1_atD49475.1glutamic dehydrogenase1-9e-44At3g03910GDH3 (GLUTAMATE DEHYDROGENASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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