CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.219974.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.219974.1.S1_at pmrna36177 hypothetical protein - 2e-3 At2g45040 matrix metalloproteinase S.X. H.G.
0.77 94.9 PtpAffx.25308.1.S1_a_at CN550378 - - 4e+0 At5g20970 heat shock family protein S.X. H.G.
0.71 92.6 PtpAffx.25308.1.S1_x_at CN550378 - - 4e+0 At5g20970 heat shock family protein S.X. H.G.
0.57 84.2 PtpAffx.220048.1.S1_at pmrna36320 hypothetical protein - 7e-7 At2g35270 DNA-binding protein-related S.X. H.G.
0.48 75.4 PtpAffx.23330.1.S1_at CX656526 hypothetical protein - 2e-12 At4g25300 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.43 69.7 PtpAffx.211928.1.S1_at pmrna23424 hypothetical protein - 2e+0 At2g33793 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.1 99.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
17.3 99.6 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
16.8 99.6 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
13.0 99.4 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
12.2 99.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7 85.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.2 79.6 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
0.9 74.2 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.9 74.2 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.8 72.0 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.76 0 1001 PtpAffx.203021.1.S1_at pmrna5979 hypothetical protein - 2e+0 At4g16640 matrix metalloproteinase, putative C.G. S.X.
0.17 4e-12 73 PtpAffx.221043.1.S1_at pmrna37595 hypothetical protein - 7e-6 At1g59970 matrixin family protein C.G. S.X.
0.08 2e-4 48 PtpAffx.202133.1.S1_at pmrna4261 - - 1e+0 At4g20280 TAF11 (TBP-ASSOCIATED FACTOR 11) C.G. S.X.
0.03 5e-2 40 PtpAffx.212882.1.S1_s_at pmrna25210 hypothetical protein - 3e-4 At5g63480 unknown protein C.G. S.X.
0.01 2e-1 38 PtpAffx.211113.1.S1_at pmrna21832 hypothetical protein - 8e-1 Atcg00080 - C.G. S.X.
0.03 2e-1 38 PtpAffx.200136.1.S1_at pmrna249 hypothetical protein - 4e-2 At2g43030 ribosomal protein L3 family protein C.G. S.X.
0.02 2e-1 38 PtpAffx.126235.2.S1_at CV258769 - - 1e-2 At5g10360 EMB3010 (embryo defective 3010) C.G. S.X.
0.02 2e-1 38 PtpAffx.113940.1.A1_at CV277947 hypothetical protein - 7e-6 At5g11330 monooxygenase family protein C.G. S.X.
0.02 8e-1 36 PtpAffx.9978.1.A1_at AJ775099 hypothetical protein - 6e-6 At3g47960 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-3 44 Arabidopsis thaliana At2g45040 819111 matrix metalloproteinase F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFA - - - C.G. S.X.
0.10 5e-5 50 Glycine max GmaAffx.10671.1.S1_at BU762711 - - 6e-11 At2g45040 matrix metalloproteinase C.G. S.X.
0.02 3e-1 36 Hordeum vulgare EBpi01_SQ002_J16_at EBpi01_SQ002_J16 - - 2e-16 At1g36240 60S ribosomal protein L30 (RPL30A) C.G. S.X.
0.02 3e-1 38 Oryza sativa Os01g0809300 AF364177.1 - Leucine-rich repeat, plant specific containingprotein 1e-17 At5g21090 leucine-rich repeat protein, putative C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.11877.1.S1_at BJ316676 - - 1e+0 At4g03940 unknown protein C.G. S.X.
0.03 4e-2 38 Vitis vinifera 1621435_s_at CF515294 hypothetical protein LOC100253802 - 2e+0 At2g18040 PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) C.G. S.X.
0.02 4e+0 32 Zea mays Zm.9482.1.A1_at BM269229 - - 5e+0 At5g50020 zinc finger (DHHC type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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