Gene omics information

Query gene ID PtpAffx.219809.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.219809.1.S1_s_atpmrna35920hypothetical protein-6e-23At3g10040transcription factorS.X.H.G.
0.6791.1PtpAffx.35496.1.A1_atDN487965cytochrome P450-7e-3At1g75130CYP721A1S.X.H.G.
0.6791.1Ptp.3963.1.S1_atDN488508gtp-binding protein SAR1-5e-50At4g02080ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)S.X.H.G.
0.5582.2PtpAffx.26699.1.S1_atCV242578--5e+0At5g63270nitrate-responsive NOI protein, putativeS.X.H.G.
0.5380.5PtpAffx.222664.1.S1_atpmrna40216hypothetical protein-7e-1At4g19840ATPP2-A1S.X.H.G.
0.4067.0PtpAffx.46129.1.S1_atCV230659hypothetical protein-4e+0At2g38646unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
20.999.8GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
15.099.5GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
12.699.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
12.499.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
10.499.0GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
7.998.4GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
7.498.2GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
3.494.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.974.2GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
0.769.4GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.700765PtpAffx.213531.1.S1_s_atpmrna26443--2e-16At3g10040transcription factorC.G.S.X.
0.052e-1171PtpAffx.33716.1.S1_atDN502859--2e+0At2g34870MEE26 (maternal effect embryo arrest 26)C.G.S.X.
0.104e-963PtpAffx.205607.1.S1_atpmrna11071hypothetical protein-4e-60At1g21200transcription factorC.G.S.X.
0.144e-654PtpAffx.200168.1.S1_atpmrna311hypothetical protein-1e-10At1g76870-C.G.S.X.
0.072e-552PtpAffx.203523.1.S1_atpmrna7002hypothetical protein-6e-7At1g21200transcription factorC.G.S.X.
0.014e-344PtpAffx.209017.1.S1_atpmrna17863--9e-17At1g69020prolyl oligopeptidase family proteinC.G.S.X.
0.013e-138PtpAffx.225216.1.S1_atpmrna44399hypothetical protein-4e-12At1g09820pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.013e-138PtpAffx.211171.1.S1_atpmrna21961hypothetical protein-4e-7At4g38070bHLH family proteinC.G.S.X.
0.013e-138PtpAffx.208809.1.S1_x_atpmrna17468hypothetical protein-6e-9At1g60200splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.196e-23109Arabidopsis thalianaAt3g10040820165transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA---C.G.S.X.
0.301e-52208Glycine maxGma.8446.1.S1_atAF350328.1SHOOT2 protein-6e-23At3g10040transcription factorC.G.S.X.
0.046e-961Hordeum vulgareContig8406_atContig8406--4e-2At3g10040transcription factorC.G.S.X.
0.041e-450Oryza sativaOs11g0163500AK101154.1-Homeodomain-like containing protein9e-8At1g21200transcription factorC.G.S.X.
0.053e-654Triticum aestivumTa.9858.1.S1_atCA690155--7e-2At3g10040transcription factorC.G.S.X.
0.022e-136Vitis vinifera1607003_atCF607352--4e+0At3g47650bundle-sheath defective protein 2 family / bsd2 familyC.G.S.X.
0.038e-238Zea maysZm.11755.1.A1_atBM380478--1e+0At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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