Gene omics information

Query gene ID	PtpAffx.219686.1.S1_at
Gene name	cytochrome P450
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.36	61.6	PtpAffx.219686.1.S1_at	pmrna35660	cytochrome P450	-	1e+0	At3g14650	CYP72A11	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.28818.1.S1_at	BU812529	-	-	4e+0	At4g14305	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.212939.1.S1_at	pmrna25319	hypothetical protein	-	2e-8	At5g07380	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.222656.1.S1_at	pmrna40203	hypothetical protein	-	4e-2	At1g33340	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.203936.1.S1_at	pmrna7766	hypothetical protein	-	7e-1	At3g06740	zinc finger (GATA type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.209579.1.S1_at	pmrna18958	hypothetical protein	-	2e-1	At3g52150	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	98.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.9	98.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
7.0	98.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.2	97.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9	95.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	2e-104	379	PtpAffx.221999.1.S1_s_at	pmrna39183	cytochrome P450 /// cytochrome P450	-	3e+0	At4g21920	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.71	2e-104	379	PtpAffx.221999.1.S1_at	pmrna39183	cytochrome P450	-	3e+0	At4g21920	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-3	44	PtpAffx.209960.1.S1_s_at	pmrna19645	cytochrome P450 /// cytochrome P450	-	2e-4	At1g11610	CYP71A18	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.201463.1.S1_at	pmrna2880	hypothetical protein	-	6e-3	At5g39100	GLP6 (GERMIN-LIKE PROTEIN 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.133887.1.A1_at	CV257919	-	-	4e+0	At5g51700	PBS2 (PPHB SUSCEPTIBLE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.91671.1.S1_at	CV267166	-	-	3e-72	At5g49020	PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	PtpAffx.64674.1.S1_s_at	CV255442	hypothetical protein	-	5e-2	At1g05420	OFP12 (OVATE FAMILY PROTEIN 12)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.54366.1.A1_at	CK087841	hypothetical protein	-	7e-3	At4g31820	ENP (ENHANCER OF PINOID)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-1	36	PtpAffx.111866.1.S1_at	BU102300	hypothetical protein	-	4e-11	At3g54190	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g14650	820693	CYP72A11	putative cytochrome P450	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-2	40	Glycine max	GmaAffx.74241.1.S1_at	BI786740	-	-	1e-6	At1g75130	CYP721A1	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	HS18C23u_x_at	HS18C23u	-	-	3e+0	At2g33830	dormancy/auxin associated family protein	C.G.	S.X.	Please select
0.02	9e+0	32	Oryza sativa	Os06g0642300	9634.m04199	-	-	2e-4	At3g26330	CYP71B37	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Triticum aestivum	TaAffx.112950.1.S1_at	CA619983	-	-	4e-6	At5g01200	myb family transcription factor	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1612819_at	CF568842	-	-	5e-15	At3g58030	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	5e-1	34	Zea mays	ZmAffx.1361.1.S1_at	40794996-49	-	-	7e-1	At3g10940	protein phosphatase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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