Gene omics information

Query gene ID	PtpAffx.219665.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.219665.1.S1_s_at	pmrna35632	hypothetical protein	-	2e+1	At5g62623	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.207897.1.S1_at	pmrna15676	hypothetical protein	-	2e-20	At1g13750	calcineurin-like phosphoesterase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.24713.1.A1_s_at	CV249144	hypothetical protein	-	1e-53	At5g39850	40S ribosomal protein S9 (RPS9C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.00	0.4	PtpAffx.17980.1.A1_a_at	CV273814	hypothetical protein	-	2e-6	At2g35470	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.00	0.4	PtpAffx.161836.1.A1_at	CV229144	hypothetical protein	-	3e+0	At4g18170	WRKY28	S.X.	H.G.	Please selecteFP Browser (expression)
0.00	0.4	Ptp.4055.1.S1_a_at	CV241681	hypothetical protein	-	1e+0	At5g26622	beta-galactosidase	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.6	99.7	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.4	98.2	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.3	96.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	3e-91	333	PtpAffx.219666.1.S1_at	pmrna35633	hypothetical protein	-	5e-1	At4g11911	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	7e-3	40	PtpAffx.218543.1.S1_at	pmrna34202	hypothetical protein	-	1e+0	At5g46790	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-1	34	PtpAffx.220796.1.S1_at	pmrna37234	hypothetical protein	-	2e-1	At1g60815	RALFL7 (RALF-LIKE 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-1	34	PtpAffx.218250.1.S1_at	pmrna33802	hypothetical protein	-	2e+1	At5g48420	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	4e-1	34	PtpAffx.215065.1.S1_at	pmrna29024	hypothetical protein	-	2e-1	At5g44565	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	34	PtpAffx.210910.1.S1_at	pmrna21433	hypothetical protein	-	6e-11	At1g54990	AXR4 (AUXIN RESISTANT 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-1	34	PtpAffx.150004.1.S1_s_at	BU883888	hypothetical protein	-	8e-2	At4g12500	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-1	34	PtpAffx.150004.1.S1_at	BU883888	hypothetical protein	-	8e-2	At4g12500	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-1	34	PtpAffx.136671.1.A1_s_at	CV258767	hypothetical protein	-	9e-2	At4g19690	IRT1 (iron-regulated transporter 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e+1	28	Arabidopsis thaliana	At5g62623	3771550	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-1	34	Glycine max	Gma.13836.1.A1_at	CD407625	-	-	3e-1	At3g58600	-	C.G.	S.X.	Please select
0.05	2e+0	30	Hordeum vulgare	Contig12544_s_at	Contig12544	-	-	2e+1	At5g03100	F-box family protein	C.G.	S.X.	Please select
0.05	1e-1	36	Oryza sativa	Os07g0213600	AK107696.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	3e-1	At5g61660	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	3e-1	34	Triticum aestivum	Ta.21753.1.S1_at	CA700559	-	-	1e+0	At5g23680	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.04	1e+0	30	Vitis vinifera	1614166_at	CF568967	-	-	1e+0	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	C.G.	S.X.	Please select
0.06	5e-1	32	Zea mays	Zm.1352.1.A1_at	AY106566.1	-	-	4e+0	At5g46010	homeobox-leucine zipper transcription factor family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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