Gene omics information

Query gene ID PtpAffx.219665.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.219665.1.S1_s_atpmrna35632hypothetical protein-2e+1At5g62623-S.X.H.G.
0.023.6PtpAffx.207897.1.S1_atpmrna15676hypothetical protein-2e-20At1g13750calcineurin-like phosphoesterase family proteinS.X.H.G.
0.012.2PtpAffx.24713.1.A1_s_atCV249144hypothetical protein-1e-53At5g3985040S ribosomal protein S9 (RPS9C)S.X.H.G.
0.000.4PtpAffx.17980.1.A1_a_atCV273814hypothetical protein-2e-6At2g35470unknown proteinS.X.H.G.
0.000.4PtpAffx.161836.1.A1_atCV229144hypothetical protein-3e+0At4g18170WRKY28S.X.H.G.
0.000.4Ptp.4055.1.S1_a_atCV241681hypothetical protein-1e+0At5g26622beta-galactosidaseS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
19.699.7GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.498.2GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.396.9GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
4.896.4GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
4.896.4GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
4.596.1GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.395.8GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue series
4.395.8GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
4.095.3GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.293e-91333PtpAffx.219666.1.S1_atpmrna35633hypothetical protein-5e-1At4g11911-C.G.S.X.
0.067e-340PtpAffx.218543.1.S1_atpmrna34202hypothetical protein-1e+0At5g46790unknown proteinC.G.S.X.
0.054e-134PtpAffx.220796.1.S1_atpmrna37234hypothetical protein-2e-1At1g60815RALFL7 (RALF-LIKE 7)C.G.S.X.
0.054e-134PtpAffx.218250.1.S1_atpmrna33802hypothetical protein-2e+1At5g48420unknown proteinC.G.S.X.
0.074e-134PtpAffx.215065.1.S1_atpmrna29024hypothetical protein-2e-1At5g44565unknown proteinC.G.S.X.
0.024e-134PtpAffx.210910.1.S1_atpmrna21433hypothetical protein-6e-11At1g54990AXR4 (AUXIN RESISTANT 4)C.G.S.X.
0.054e-134PtpAffx.150004.1.S1_s_atBU883888hypothetical protein-8e-2At4g12500protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.054e-134PtpAffx.150004.1.S1_atBU883888hypothetical protein-8e-2At4g12500protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.044e-134PtpAffx.136671.1.A1_s_atCV258767hypothetical protein-9e-2At4g19690IRT1 (iron-regulated transporter 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e+128Arabidopsis thalianaAt5g626233771550-Encodes a defensin-like (DEFL) family protein.---C.G.S.X.
0.054e-134Glycine maxGma.13836.1.A1_atCD407625--3e-1At3g58600-C.G.S.X.
0.052e+030Hordeum vulgareContig12544_s_atContig12544--2e+1At5g03100F-box family proteinC.G.S.X.
0.051e-136Oryza sativaOs07g0213600AK107696.1-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein3e-1At5g61660glycine-rich proteinC.G.S.X.
0.103e-134Triticum aestivumTa.21753.1.S1_atCA700559--1e+0At5g23680sterile alpha motif (SAM) domain-containing proteinC.G.S.X.
0.041e+030Vitis vinifera1614166_atCF568967--1e+0At1g11870SRS (SERYL-TRNA SYNTHETASE)C.G.S.X.
0.065e-132Zea maysZm.1352.1.A1_atAY106566.1--4e+0At5g46010homeobox-leucine zipper transcription factor family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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