Gene omics information

Query gene ID	PtpAffx.219605.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.49	75.7	PtpAffx.219605.1.S1_at	pmrna35564	hypothetical protein	-	2e-2	At1g58440	XF1	S.X.	H.G.	Please selecteFP Browser (expression)
0.70	91.7	PtpAffx.205143.1.S1_at	pmrna10181	hypothetical protein	-	6e-2	At5g41260	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.388.3.S1_s_at	CN523140	hypothetical protein	-	5e-29	At5g55120	VTC5 (VITAMIN C DEFECTIVE 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.127300.1.A1_at	CV263029	hypothetical protein	-	3e-7	At5g60750	CAAX amino terminal protease family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.35473.1.S1_a_at	CV244186	hypothetical protein	-	3e-1	At3g23280	zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.89237.1.A1_at	CV232343	hypothetical protein	-	3e-11	At1g21710	OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.201757.1.S1_at	pmrna3505	hypothetical protein	-	1e+0	At1g08270	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.249.450.S1_at	CN518216	hypothetical protein	-	1e+0	At1g52590	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.208718.1.S1_at	pmrna17288	hypothetical protein	-	3e-2	At3g61400	2-oxoglutarate-dependent dioxygenase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.131828.1.S1_at	BU883976	hypothetical protein	-	5e-17	At2g24220	ATPUP5	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	97.7	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.8	97.4	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.9	96.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.6	96.2	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	642	PtpAffx.38933.1.S1_at	BU872946	hypothetical protein	-	5e-4	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	3e-119	428	PtpAffx.216262.1.S1_at	pmrna30919	hypothetical protein	-	2e+0	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	3e-119	428	PtpAffx.216262.1.S1_s_at	pmrna30919	hypothetical protein	-	2e+0	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	2e-6	54	PtpAffx.212998.1.S1_s_at	pmrna25415	hypothetical protein	-	3e-15	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	1e-4	48	PtpAffx.218376.1.S1_x_at	pmrna33970	hypothetical protein	-	1e-2	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	1e-4	48	PtpAffx.218376.1.S1_at	pmrna33970	hypothetical protein	-	1e-2	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	4e-4	46	PtpAffx.218378.1.S1_at	pmrna33972	-	-	4e-15	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-3	44	PtpAffx.60647.1.S1_at	CV266317	hypothetical protein	-	3e-55	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	2e-3	44	PtpAffx.205391.1.S1_at	pmrna10677	hypothetical protein	-	3e-68	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-2	40	Arabidopsis thaliana	At1g58440	842213	XF1	Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-5	50	Glycine max	Gma.6225.1.S1_at	CD390358	-	-	1e-13	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.03	8e+0	30	Hordeum vulgare	HU04B19u_at	HU04B19u	-	-	4e+0	At3g48480	cysteine-type peptidase	C.G.	S.X.	Please select
0.07	9e-9	61	Oryza sativa	Os03g0231800	AK065032.1	-	XF1 protein (Squalene monooxygenase, putative)	1e-18	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-6	54	Triticum aestivum	Ta.7591.1.S1_at	CD872021	-	-	2e-8	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.16	2e-8	57	Vitis vinifera	1612781_at	CB978740	hypothetical protein LOC100254037	-	2e-2	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.08	1e-4	46	Zea mays	Zm.960.1.S1_at	BU093044	hypothetical protein LOC100274333	-	1e-4	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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