CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.219584.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.36 61.6 PtpAffx.219584.1.S1_at pmrna35542 - - 3e+1 At3g49540 unknown protein S.X. H.G.
0.10 16.3 PtpAffx.16539.1.A1_at BP934558 - - 4e+0 At3g05500 rubber elongation factor (REF) family protein S.X. H.G.
0.01 2.2 PtpAffx.102228.1.A1_at CV232856 fasciclin-like AGP 14.8 protein - 1e+1 At5g51090 unknown protein S.X. H.G.
0.01 2.2 PtpAffx.219703.1.S1_at pmrna35689 hypothetical protein - 2e-3 At1g19115 unknown protein S.X. H.G.
0.01 2.2 PtpAffx.208349.1.S1_at pmrna16598 hypothetical protein - 8e-6 At5g18920 unknown protein S.X. H.G.
0.01 2.2 PtpAffx.225682.1.S1_at pmrna45210 hypothetical protein - 8e-16 At5g66420 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.1 99.4 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
8.8 98.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.4 95.9 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3 95.8 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 PtpAffx.27269.1.A1_at CV255808 hypothetical protein - 4e-1 At1g43171 unknown protein C.G. S.X.
0.05 4e-2 40 PtpAffx.220158.1.S1_at pmrna36512 hypothetical protein - 2e+0 At1g53935 unknown protein C.G. S.X.
0.02 4e-2 40 PtpAffx.217989.1.S1_at pmrna33484 hypothetical protein - 5e-1 At3g25577 unknown protein C.G. S.X.
0.03 1e-1 38 PtpAffx.220460.1.S1_at pmrna36853 hypothetical protein - 3e+0 At5g20570 RBX1 (RING-BOX 1) C.G. S.X.
0.02 6e-1 36 PtpAffx.223616.1.S1_at pmrna41686 hypothetical protein - 8e+0 At4g13110 BSD domain-containing protein C.G. S.X.
0.03 2e+0 34 PtpAffx.219328.1.S1_at pmrna35215 hypothetical protein - 1e+1 At2g25890 glycine-rich protein / oleosin C.G. S.X.
0.02 2e+0 34 PtpAffx.219139.1.S1_at pmrna34973 - - 3e+1 At5g27910 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) C.G. S.X.
0.02 2e+0 34 PtpAffx.218867.1.S1_at pmrna34610 - - 4e+0 At1g02780 emb2386 (embryo defective 2386) C.G. S.X.
0.03 2e+0 34 PtpAffx.218154.1.S1_at pmrna33685 hypothetical protein - 1e-1 At3g13200 EMB2769 (EMBRYO DEFECTIVE 2769) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+1 30 Arabidopsis thaliana At3g49540 824116 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OBMFPVA - - - C.G. S.X.
0.03 6e-1 36 Glycine max PsAffx.C32000021_s_at PsAffx.C32000021 - - 4e+0 At1g15385 unknown protein C.G. S.X.
0.03 8e-1 34 Hordeum vulgare rbaal1i09_at rbaal1i09 - - 8e-1 At4g27900 - C.G. S.X.
0.03 2e-1 38 Oryza sativa Os01g0358866 NM_193998.1 - - 4e+0 At3g44950 glycine-rich protein C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.114165.1.S1_at CA597530 - - 3e-1 At4g25080 CHLM (magnesium-protoporphyrin IX methyltransferase) C.G. S.X.
0.03 8e+0 30 Vitis vinifera 1620572_at CA816726 - - 4e+0 At5g01650 macrophage migration inhibitory factor family protein / MIF family protein C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.682.1.A1_at AI734793 - - 3e+0 At1g27000 bZIP family transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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