Gene omics information

Query gene ID	PtpAffx.21946.1.A1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.21946.1.A1_a_at	CV274757	hypothetical protein	-	9e-1	At3g06360	AGP27	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.13789.1.S1_s_at	CK091431	hypothetical protein	-	1e-16	At1g02730	ATCSLD5	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.83574.1.S1_at	CN522119	-	-	2e-1	At3g44960	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.204638.1.S1_at	pmrna9117	hypothetical protein	-	9e-1	At5g57790	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.4277.1.S1_at	BU835183	-	-	2e+0	At5g07910	leucine-rich repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.212277.1.S1_at	pmrna24067	hypothetical protein	-	4e-78	At1g50240	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.209966.1.S1_at	pmrna19653	hypothetical protein	-	2e-64	At1g53140	dynamin family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.28135.1.S1_at	CK096581	-	-	9e-12	At4g02710	kinase interacting family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.0	99.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.5	97.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	3e-146	517	PtpAffx.21946.1.A1_at	CV274757	hypothetical protein	-	9e-1	At3g06360	AGP27	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-5	50	PtpAffx.24142.1.A1_at	CV262024	hypothetical protein	-	2e-8	At3g59050	ATPAO3 (Polyamine oxidase 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-2	40	PtpAffx.31607.1.A1_at	CV228774	-	-	3e+0	At5g49440	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e-2	38	PtpAffx.953.2.A1_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e-2	38	PtpAffx.953.2.A1_a_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	36	PtpAffx.679.1.S1_s_at	CV276694	peroxiredoxin	-	5e-41	At3g26060	ATPRX Q	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	36	PtpAffx.679.1.S1_at	CV276694	peroxiredoxin	-	5e-41	At3g26060	ATPRX Q	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	36	PtpAffx.212753.1.S1_at	pmrna24943	hypothetical protein	-	2e-35	At1g74900	OTP43 (organelle transcript processing defect 43)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-1	36	Ptp.6223.1.S1_s_at	BU809597	hypothetical protein	-	3e-30	At2g43020	ATPAO2 (Polyamine oxidase 2)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-1	34	Arabidopsis thaliana	At3g06360	819810	AGP27	Encodes an arabinogalactan-protein (AGP27).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-2	40	Glycine max	GmaAffx.38155.1.S1_at	BU926825	-	-	2e-1	At4g03180	unknown protein	C.G.	S.X.	Please select
0.04	7e+0	30	Hordeum vulgare	HVSMEn0020J21r2_s_at	HVSMEn0020J21r2	-	-	7e+0	At1g16225	-	C.G.	S.X.	Please select
0.03	7e+0	32	Oryza sativa	OsAffx.20390.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+1	30	Triticum aestivum	TaAffx.8689.1.S1_at	CA621605	-	-	2e-7	At2g18915	LKP2 (LOV KELCH PROTEIN 2)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1616758_at	CB343271	-	-	4e+0	At5g09390	CD2-binding protein-related	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.9386.1.A1_at	BQ539064	hypothetical protein LOC100275351	-	2e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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