Gene omics information

Query gene ID	PtpAffx.219346.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	97.4	PtpAffx.219346.1.S1_s_at	pmrna35239	hypothetical protein	-	6e-14	At5g02490	heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.129707.1.S1_at	CF231921	hypothetical protein	-	7e-2	At5g46030	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.214260.1.S1_at	pmrna27746	hypothetical protein	-	1e-54	At4g31770	calcineurin-like phosphoesterase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.4868.1.S1_at	CV243275	-	-	1e-8	At1g55000	peptidoglycan-binding LysM domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.214474.1.S1_at	pmrna28150	hypothetical protein	-	1e-6	At5g58005	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.211491.1.S1_at	pmrna22521	hypothetical protein	-	2e-22	At4g31010	RNA binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.105370.1.S1_s_at	BU820284	hypothetical protein	-	3e-1	At5g17610	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.58188.1.S1_at	CN192540	hypothetical protein	-	1e-3	At1g07310	C2 domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.202121.1.S1_s_at	pmrna4240	hypothetical protein	-	1e-19	At3g60240	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.152736.1.S1_at	CX169611	-	-	4e-1	At2g28500	LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	97.7	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.0	97.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.2	96.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.6	96.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	791	PtpAffx.219346.1.S1_at	pmrna35239	hypothetical protein	-	6e-14	At5g02490	heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.70	0	638	PtpAffx.219353.1.S1_at	pmrna35250	hypothetical protein	-	1e-15	At5g02490	heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	5e-21	101	PtpAffx.249.468.A1_at	CF119463	hypothetical protein	-	3e-97	At1g56410	ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	5e-21	101	PtpAffx.249.485.S1_at	CA933751	hypothetical protein	-	1e-90	At3g09440	heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	1e-15	83	PtpAffx.249.10.S1_x_at	CV272832	hypothetical protein	-	0	At3g09440	heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	5e-12	71	PtpAffx.219347.1.S1_s_at	pmrna35240	-	-	2e-5	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	2e-11	69	PtpAffx.249.475.S1_a_at	CK320536	hypothetical protein	-	1e-112	At3g12580	HSP70 (heat shock protein 70)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	7e-8	57	PtpAffx.207705.1.S1_at	pmrna15299	hypothetical protein	-	3e-22	At3g09440	heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	7e-5	48	PtpAffx.211687.1.S1_at	pmrna22906	hypothetical protein	-	3e+0	At4g10940	PHD finger family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	6e-14	77	Arabidopsis thaliana	At5g02490	831856	heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)	F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-14	79	Glycine max	Gma.11179.2.S1_s_at	BI945894	-	-	5e-43	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.07	4e-13	73	Hordeum vulgare	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.08	4e-13	75	Oryza sativa	Os11g0703900	AK119710.1	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	3e-9	61	Triticum aestivum	TaAffx.31384.1.S1_at	CA616851	-	-	5e-9	At3g12580	HSP70 (heat shock protein 70)	C.G.	S.X.	Please select
0.05	2e-1	34	Vitis vinifera	1612371_s_at	CF607215	hypothetical protein LOC100249184	-	5e-27	At4g24280	cpHsc70-1 (chloroplast heat shock protein 70-1)	C.G.	S.X.	Please select
0.06	4e-10	63	Zea mays	Zm.4805.1.A1_at	CD441355	heat shock protein 70 kDa	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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