CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.219044.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 PtpAffx.219044.1.S1_at pmrna34839 hypothetical protein - 3e+1 At5g17190 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.111323.1.S1_at DN497161 hypothetical protein - 3e-14 At4g02050 sugar transporter, putative S.X. H.G.
0.33 57.5 PtpAffx.213256.1.S1_at pmrna25933 hypothetical protein - 2e+0 At2g42190 unknown protein S.X. H.G.
0.22 38.3 PtpAffx.213829.1.S1_at pmrna26986 - - 4e-1 At1g78210 hydrolase, alpha/beta fold family protein S.X. H.G.
0.17 29.1 PtpAffx.121318.1.A1_at CV244320 - - 4e+0 At5g59880 ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) S.X. H.G.
0.11 18.1 PtpAffx.206460.1.S1_at pmrna12812 hypothetical protein - 5e-24 At3g11980 MS2 (MALE STERILITY 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.7 99.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.9 98.9 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.8 98.7 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
8.5 98.6 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.9 97.4 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.7 97.3 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5 96.1 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 36 PtpAffx.51715.1.S1_at CK092040 hypothetical protein - 4e-14 At1g12020 unknown protein C.G. S.X.
0.04 6e-1 34 PtpAffx.84688.1.S1_at CV243797 hypothetical protein - 6e-9 At5g24860 FPF1 (FLOWERING PROMOTING FACTOR 1) C.G. S.X.
0.04 6e-1 34 PtpAffx.7284.3.A1_at CV266990 hypothetical protein - 5e-31 At1g62040 ATG8C (autophagy 8c) C.G. S.X.
0.02 6e-1 34 PtpAffx.45441.1.A1_at CV244004 hypothetical protein - 8e-7 At2g01080 - C.G. S.X.
0.02 6e-1 34 PtpAffx.4558.1.S1_at CF227976 hypothetical protein - 3e+0 At1g48690 auxin-responsive GH3 family protein C.G. S.X.
0.04 6e-1 34 PtpAffx.249.837.A1_at CV250313 hypothetical protein - 5e+0 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.04 6e-1 34 PtpAffx.221517.1.S1_at pmrna38443 hypothetical protein - 1e-13 At1g17665 unknown protein C.G. S.X.
0.02 6e-1 34 PtpAffx.204502.1.S1_x_at pmrna8831 hypothetical protein - 4e-2 At2g47450 CAO (CHAOS) C.G. S.X.
0.03 6e-1 34 PtpAffx.203487.1.S1_at pmrna6944 hypothetical protein - 1e-1 At5g29000 myb family transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+1 28 Arabidopsis thaliana At5g17190 831583 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.05 9e+0 30 Glycine max PsAffx.psHB038xJ23f_at PsAffx.psHB038xJ23f - - 1e+1 At4g17215 unknown protein C.G. S.X.
0.04 2e-1 34 Hordeum vulgare Contig1330_at Contig1330 - - 2e-95 At3g56800 CAM3 (CALMODULIN 3) C.G. S.X.
0.04 3e-3 42 Oryza sativa Os01g0588900 NM_192559.1 - Conserved hypothetical protein 730 family protein 3e-1 At2g35990 - C.G. S.X.
0.08 4e-1 34 Triticum aestivum TaAffx.38078.1.A1_at BJ251380 - - 2e+0 At4g12005 unknown protein C.G. S.X.
0.04 2e+0 30 Vitis vinifera 1614554_at CD799849 - - 2e-20 At1g56045 ribosomal protein L41 family protein C.G. S.X.
0.03 7e-1 32 Zea mays Zm.9638.1.S1_at BM332555 - - 4e-1 At5g57655 xylose isomerase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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