Gene omics information

Query gene ID	PtpAffx.218924.1.S1_at
Gene name	autoinhibited calcium ATPase
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	PtpAffx.218924.1.S1_at	pmrna34683	autoinhibited calcium ATPase	-	1e-28	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.204028.1.S1_at	pmrna7945	hypothetical protein	-	6e-60	At1g65960	GAD2 (GLUTAMATE DECARBOXYLASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.206298.1.S1_at	pmrna12485	hypothetical protein	-	2e-17	At3g54100	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.200244.1.S1_at	pmrna472	hypothetical protein	-	3e-13	At5g13150	ATEXO70C1 (exocyst subunit EXO70 family protein C1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.204952.1.S1_at	pmrna9797	hypothetical protein	-	6e-13	At3g46750	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.202223.1.S1_at	pmrna4451	hypothetical protein	-	1e-30	At4g00350	MATE efflux family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.3	99.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
18.1	99.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
15.6	99.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
15.6	99.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
15.2	99.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
11.8	99.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.1	42.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.0	33.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.0	33.6	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.0	33.6	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	0	3154	PtpAffx.203527.1.S1_at	pmrna7009	autoinhibited calcium ATPase	-	9e-27	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-7	59	PtpAffx.86362.1.S1_s_at	CV274254	autoinhibited calcium ATPase /// autoinhibited calcium ATPase	-	8e-86	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-7	59	PtpAffx.86362.1.S1_at	CV274254	autoinhibited calcium ATPase	-	8e-86	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-6	56	PtpAffx.209467.1.S1_at	pmrna18776	autoinhibited calcium ATPase	-	6e-136	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	4e-5	52	PtpAffx.134543.1.A1_a_at	CV231972	autoinhibited calcium ATPase /// autoinhibited calcium ATPase	-	1e-10	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	4e-5	52	PtpAffx.134543.1.A1_at	CV231972	autoinhibited calcium ATPase	-	1e-10	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-3	46	PtpAffx.206177.1.S1_at	pmrna12264	autoinhibited calcium ATPase	-	1e-52	At4g29900	ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	9e-3	44	Ptp.1858.1.S1_at	BU812732	hypothetical protein	-	8e-71	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-2	42	PtpAffx.222775.1.S1_at	pmrna40419	hypothetical protein	-	3e-3	At5g17050	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	1e-28	129	Arabidopsis thaliana	At2g41560	818754	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	8e-28	127	Glycine max	Gma.6344.1.S1_s_at	BU765544	-	-	5e-63	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	C.G.	S.X.	Please select
0.15	4e-15	83	Hordeum vulgare	Contig11449_at	Contig11449	-	-	9e-29	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	C.G.	S.X.	Please select
0.22	4e-18	95	Oryza sativa	Os11g0140400	9640.m00336	-	Calcium-translocating P-type ATPase, PMCA-typefamily protein	2e-24	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	1e-13	79	Triticum aestivum	Ta.10263.2.S1_at	BJ243367	-	-	4e-10	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	C.G.	S.X.	Please select
0.14	6e-19	95	Vitis vinifera	1613997_at	CB970314	hypothetical protein LOC100246545	-	3e-13	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	C.G.	S.X.	Please select
0.06	5e-5	50	Zea mays	Zm.17277.1.S1_at	CF273093	-	-	1e-45	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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