Gene omics information

Query gene ID	PtpAffx.218777.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	PtpAffx.218777.1.S1_s_at	pmrna34505	hypothetical protein	-	7e-6	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.2548.1.A1_at	CV259452	-	-	4e-12	At1g76690	OPR2	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.140744.1.A1_at	CV246726	-	-	8e-1	At5g07880	SNAP29	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.210101.1.S1_at	pmrna19893	auxin efflux carrier family protein	-	2e-6	At1g20925	auxin efflux carrier family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.225262.1.S1_s_at	pmrna44486	BED finger-nbs-lrr resistance protein /// hypothetical protein	-	2e-1	At2g21780	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.158291.1.A1_s_at	BP931571	hypothetical protein	-	3e+0	At5g65320	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	Ptp.3141.1.S1_at	DN485938	-	-	5e-1	At2g32820	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.91502.1.S1_at	CV231034	hypothetical protein	-	1e-1	At1g17200	integral membrane family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.134586.1.A1_at	CV230232	hypothetical protein	-	1e-3	At3g63470	scpl40 (serine carboxypeptidase-like 40)	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.224659.1.S1_at	pmrna43414	hypothetical protein	-	2e-14	At1g69170	squamosa promoter-binding protein-like 6 (SPL6)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.3	99.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
9.8	98.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
9.6	98.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.0	98.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
7.9	98.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.5	97.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	4e-119	426	PtpAffx.207414.1.S1_at	pmrna14716	hypothetical protein	-	3e-5	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	6e-10	63	PtpAffx.5866.2.A1_at	CV232488	hypothetical protein	-	1e-19	At1g46480	WOX4 (WUSCHEL RELATED HOMEOBOX 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	6e-10	63	Ptp.6384.3.S1_at	CK092709	hypothetical protein	-	9e-11	At1g46480	WOX4 (WUSCHEL RELATED HOMEOBOX 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	6e-10	63	Ptp.6384.1.S1_a_at	CV265840	hypothetical protein	-	1e-19	At1g46480	WOX4 (WUSCHEL RELATED HOMEOBOX 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	9e-6	50	PtpAffx.208881.1.S1_at	pmrna17616	hypothetical protein	-	5e-1	At2g01500	PFS2 (PRETTY FEW SEEDS 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	2e-3	42	PtpAffx.204978.1.S1_x_at	pmrna9849	hypothetical protein	-	1e+0	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	2e-3	42	PtpAffx.204978.1.S1_s_at	pmrna9849	hypothetical protein	-	1e+0	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-2	38	PtpAffx.112726.1.A1_at	DN485881	-	-	4e+0	At4g04745	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	34	PtpAffx.49910.1.A1_at	CV257029	hypothetical protein	-	4e-20	At3g48980	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	7e-6	50	Arabidopsis thaliana	At5g05770	830462	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	1e-7	56	Glycine max	GmaAffx.83173.2.S1_at	BQ253856	-	-	2e-41	At1g46480	WOX4 (WUSCHEL RELATED HOMEOBOX 4)	C.G.	S.X.	Please select
0.05	3e+0	30	Hordeum vulgare	HVSMEl0009P01r2_at	HVSMEl0009P01r2	-	-	1e+0	At3g26110	-	C.G.	S.X.	Please select
0.04	1e+1	30	Oryza sativa	Os06g0256800	9634.m01451	-	Conserved hypothetical protein	4e+0	At4g36660	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e+0	32	Triticum aestivum	TaAffx.85824.1.S1_at	CA619285	-	-	3e+0	At3g09890	ankyrin repeat family protein	C.G.	S.X.	Please select
0.12	5e-13	71	Vitis vinifera	1606491_at	CF214767	hypothetical protein LOC100250666	-	5e-22	At1g46480	WOX4 (WUSCHEL RELATED HOMEOBOX 4)	C.G.	S.X.	Please select
0.04	1e+1	28	Zea mays	ZmAffx.1203.1.S1_at	BE128869	lipase	-	3e-9	At1g10740	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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