CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.218771.1.S1_s_at

Gene name jumonji domain protein /// hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.218771.1.S1_s_at pmrna34498 jumonji domain protein /// hypothetical protein - 5e-26 At1g30810 transcription factor S.X. H.G.
0.75 94.1 PtpAffx.207242.1.S1_at pmrna14353 hypothetical protein - 2e-20 At4g35470 leucine-rich repeat family protein S.X. H.G.
0.57 84.2 PtpAffx.132883.1.S1_at BI072375 hypothetical protein - 2e-1 At4g10430 - S.X. H.G.
0.55 82.2 PtpAffx.35909.1.S1_at CV244075 hypothetical protein - 3e-2 At3g55970 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.40 67.0 PtpAffx.31782.2.A1_a_at CV272415 gtp-binding protein SAR1 - 4e-47 At1g09180 ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) S.X. H.G.
0.33 57.5 Ptp.7478.1.S1_at BU866961 hypothetical protein - 2e-3 At5g02220 unknown protein S.X. H.G.
0.33 57.5 PtpAffx.28701.2.S1_s_at BU867887 hypothetical protein - 1e-13 At5g01520 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.9 99.5 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
14.4 99.5 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
10.6 99.0 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.7 98.6 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.7 96.3 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3 89.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 0 1838 PtpAffx.218437.1.S1_at pmrna34047 jumonji domain protein - 9e-26 At1g30810 transcription factor C.G. S.X.
0.54 0 1229 PtpAffx.210142.1.S1_at pmrna19985 jumonji domain protein - 1e-18 At1g30810 transcription factor C.G. S.X.
0.10 5e-5 50 PtpAffx.149096.1.A1_at CK091187 jumonji domain protein - 6e-31 At1g08620 transcription factor C.G. S.X.
0.01 2e-1 38 PtpAffx.210675.1.S1_at pmrna20933 hypothetical protein - 1e-65 At4g24970 ATP-binding region, ATPase-like domain-containing protein C.G. S.X.
0.01 2e-1 38 PtpAffx.202486.1.S1_at pmrna4985 hypothetical protein - 5e-15 At3g21620 early-responsive to dehydration protein-related / ERD protein-related C.G. S.X.
0.02 2e-1 38 Ptp.1823.1.A1_at CV274596 hypothetical protein - 2e+0 At3g23130 SUP (SUPERMAN) C.G. S.X.
0.02 8e-1 36 PtpAffx.221495.1.S1_at pmrna38404 hypothetical protein - 2e+0 At3g56470 F-box family protein C.G. S.X.
0.02 8e-1 36 PtpAffx.221251.1.S1_at pmrna37999 hypothetical protein - 1e+0 At4g09270 unknown protein C.G. S.X.
0.01 8e-1 36 PtpAffx.213363.1.S1_s_at pmrna26148 hypothetical protein - 6e-46 At3g56150 EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 5e-26 119 Arabidopsis thaliana At1g30810 839963 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;MFPO - - - C.G. S.X.
0.03 2e-1 38 Glycine max HgAffx.14258.1.S1_at CB299883 - - 4e+0 At5g36662 - C.G. S.X.
0.03 4e+0 32 Hordeum vulgare rbags13g12_at rbags13g12 - - 4e+0 At5g16840 BPA1 (BINDINGPARTNEROFACD11 1) C.G. S.X.
0.06 1e-12 75 Oryza sativa Os05g0196500 AK121381.1 - Transcription factor jumonji, JmjN domaincontaining protein 2e-12 At1g08620 transcription factor C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.9882.1.S1_at BJ233679 - - 4e-1 At2g21820 unknown protein C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1613325_at CB973053 hypothetical protein LOC100244240 - 1e+0 At4g35850 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.03 4e-6 52 Zea mays Zm.17436.1.A1_at CK347538 - - 4e-1 At2g18970 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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