CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.218717.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 94.1 PtpAffx.218717.1.S1_at pmrna34439 - - 7e-1 At4g00810 60S acidic ribosomal protein P1 (RPP1B) S.X. H.G.
0.55 82.2 PtpAffx.222518.1.S1_at pmrna40014 cyclic nucleotide-gated channel - 4e-1 At2g32788 - S.X. H.G.
0.11 18.1 PtpAffx.219843.1.S1_at pmrna35992 - - 6e+0 At5g61360 unknown protein S.X. H.G.
0.05 8.3 PtpAffx.203938.1.S1_s_at pmrna7769 hypothetical protein - 6e-1 At3g30430 F-box family protein S.X. H.G.
0.02 3.6 PtpAffx.1367.1.A1_at CV228496 - - 2e-1 At2g18890 protein kinase family protein S.X. H.G.
0.01 2.2 PtpAffx.214659.1.S1_a_at pmrna28468 hypothetical protein - 2e+1 At5g51451 unknown protein S.X. H.G.
0.01 2.2 PtpAffx.216583.1.S1_at pmrna31456 cc-nbs-lrr resistance protein /// hypothetical protein /// cc-nbs-lrr resistance protein /// cc-nbs-lrr resistance protein - 1e-1 At4g05631 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.5 99.6 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
10.8 99.1 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
10.4 99.0 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.9 98.0 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
6.0 97.5 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.6 96.2 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 1e-30 133 PtpAffx.218713.1.S1_at pmrna34435 hypothetical protein - 6e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.11 4e-6 52 PtpAffx.218722.1.S1_at pmrna34444 hypothetical protein - 2e-1 At4g18070 unknown protein C.G. S.X.
0.14 2e-5 50 PtpAffx.223960.1.S1_s_at pmrna42186 hypothetical protein - 3e+0 At2g06255 ELF4-L3 (ELF4-Like 3) C.G. S.X.
0.09 7e-5 48 PtpAffx.44202.1.A1_at CV241343 - - 2e-2 At5g46780 VQ motif-containing protein C.G. S.X.
0.09 1e-3 44 PtpAffx.223395.1.S1_x_at pmrna41374 - - 3e+0 At1g68585 unknown protein C.G. S.X.
0.09 1e-3 44 PtpAffx.223395.1.S1_at pmrna41374 - - 3e+0 At1g68585 unknown protein C.G. S.X.
0.02 4e-3 42 PtpAffx.3418.1.S1_at CV229754 - - 8e-20 At2g27920 SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) C.G. S.X.
0.04 4e-3 42 PtpAffx.222832.1.S1_at pmrna40507 hypothetical protein - 5e+0 At5g66000 unknown protein C.G. S.X.
0.06 2e-2 40 PtpAffx.218716.1.S1_at pmrna34438 hypothetical protein - 1e+0 At5g20020 RAN2 C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 7e-1 34 Arabidopsis thaliana At4g00810 828004 60S acidic ribosomal protein P1 (RPP1B) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOA - - - C.G. S.X.
0.04 7e-2 38 Glycine max PsAffx.psHB036xA02f_at PsAffx.psHB036xA02f - - 3e-1 At5g02570 histone H2B, putative C.G. S.X.
0.04 4e-1 34 Hordeum vulgare Contig15162_at Contig15162 - - 1e-1 At3g22990 LFR (LEAF AND FLOWER RELATED) C.G. S.X.
0.03 6e-3 42 Oryza sativa Os.9655.1.S1_at - - - 0 C.G. S.X.
0.05 1e-2 40 Triticum aestivum Ta.15668.1.S1_at CA486223 - - 1e-2 At4g18480 CHLI1 C.G. S.X.
0.05 9e-1 32 Vitis vinifera 1616819_at CD801479 - - 1e-2 At3g15610 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.04 3e-1 34 Zea mays Zm.8849.1.A1_at BM351262 - - 1e+0 At1g48500 JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage