CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.218648.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.41 67.7 PtpAffx.218648.1.S1_at pmrna34342 hypothetical protein - 3e+1 Atmg00140 - S.X. H.G.
0.07 11.6 PtpAffx.218056.1.S1_at pmrna33575 hypothetical protein - 1e+1 At3g53900 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative S.X. H.G.
0.06 9.8 PtpAffx.211398.1.S1_at pmrna22342 hypothetical protein - 1e+0 At3g11490 rac GTPase activating protein, putative S.X. H.G.
0.05 8.3 PtpAffx.205094.1.S1_at pmrna10092 hypothetical protein - 3e+0 At4g18610 LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9) S.X. H.G.
0.03 5.2 PtpAffx.63460.1.A1_at CV240054 - - 6e+0 At3g04330 trypsin and protease inhibitor family protein / Kunitz family protein S.X. H.G.
0.03 5.2 PtpAffx.206169.1.S1_at pmrna12247 hypothetical protein - 2e+0 At5g47680 - S.X. H.G.
0.03 5.2 PtpAffx.223034.1.S1_at pmrna40821 hypothetical protein - 2e+0 At4g21720 unknown protein S.X. H.G.
0.01 2.2 PtpAffx.216701.1.S1_s_at pmrna31651 hypothetical protein - 2e+0 At5g14105 unknown protein S.X. H.G.
0.01 2.2 Ptp.3436.1.S1_at DN493047 - - 2e-9 At5g15640 mitochondrial substrate carrier family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.7 99.7 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.4 97.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.9 96.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5 94.3 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5 94.3 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-2 38 PtpAffx.220156.1.S1_at pmrna36510 hypothetical protein - 8e+0 At2g26120 glycine-rich protein C.G. S.X.
0.04 2e-1 36 PtpAffx.222110.1.S1_at pmrna39332 hypothetical protein - 3e-1 At4g21830 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
0.03 6e-1 34 PtpAffx.217899.1.S1_at pmrna33347 hypothetical protein - 3e+1 At5g45350 proline-rich family protein C.G. S.X.
0.04 6e-1 34 PtpAffx.214882.1.S1_at pmrna28794 hypothetical protein - 4e+0 At3g17240 mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) C.G. S.X.
0.02 2e+0 32 PtpAffx.26075.1.S1_s_at DN484805 hypothetical protein - 4e-76 At2g38280 FAC1 (EMBRYONIC FACTOR1) C.G. S.X.
0.04 2e+0 32 PtpAffx.218654.1.S1_at pmrna34349 hypothetical protein - 1e+1 At3g62990 unknown protein C.G. S.X.
0.03 2e+0 32 PtpAffx.217847.1.S1_at pmrna33271 hypothetical protein - 2e+0 At1g12560 ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) C.G. S.X.
0.02 2e+0 32 PtpAffx.216873.1.S1_at pmrna31918 hypothetical protein - 2e+0 At2g32100 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) C.G. S.X.
0.03 2e+0 32 PtpAffx.214796.1.S1_at pmrna28646 hypothetical protein - 1e-1 At1g78180 binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+1 28 Arabidopsis thaliana Atmg00140 - - hypothetical protein - - - C.G. S.X.
0.05 2e-1 36 Glycine max GmaAffx.62766.1.S1_s_at BE583502 - - 2e-2 At5g12360 unknown protein C.G. S.X.
0.04 8e-1 32 Hordeum vulgare Contig5883_s_at Contig5883 - - 1e+0 At1g68280 thioesterase-related C.G. S.X.
0.03 3e+0 32 Oryza sativa OsAffx.15593.1.A1_at - - - 0 C.G. S.X.
0.05 2e+0 32 Triticum aestivum Ta.1672.3.S1_x_at BE443693 - - 3e+0 At1g10657 unknown protein C.G. S.X.
0.04 3e+1 26 Vitis vinifera 1616470_at CF568801 - - 1e-9 At3g61580 delta-8 sphingolipid desaturase (SLD1) C.G. S.X.
0.05 1e+1 28 Zea mays ZmAffx.884.1.A1_at AI770816 - - 8e-1 At1g04330 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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