Gene omics information

Query gene ID	PtpAffx.218645.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	88.4	PtpAffx.218645.1.S1_at	pmrna34339	hypothetical protein	-	3e-1	At1g15350	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.28818.1.S1_at	BU812529	-	-	4e+0	At4g14305	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.224758.1.S1_at	pmrna43591	nbs-lrr resistance protein	-	9e-2	At4g02910	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.205845.1.S1_x_at	pmrna11575	hypothetical protein	-	5e-7	At1g75980	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.208855.1.S1_at	pmrna17554	hypothetical protein	-	2e-1	At1g80910	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.216363.1.S1_at	pmrna31083	hypothetical protein	-	2e-1	At5g42957	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.153410.1.A1_at	CV258412	-	-	6e-1	At4g20030	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.223222.1.S1_x_at	pmrna41101	hypothetical protein	-	1e+0	At1g59700	ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.209606.1.S1_at	pmrna18995	hypothetical protein	-	3e-8	At4g22090	pectate lyase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.147944.1.S1_at	AJ777676	hypothetical protein	-	3e-1	At4g14930	acid phosphatase survival protein SurE, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.1	98.7	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.9	98.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4	90.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-1	36	PtpAffx.216666.1.S1_at	pmrna31603	hypothetical protein	-	9e+0	At3g53970	proteasome inhibitor-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	4e-1	34	PtpAffx.218392.1.S1_at	pmrna33987	hypothetical protein	-	6e+0	At3g46910	ubiquitin protein ligase binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	32	PtpAffx.4290.3.A1_at	CV245602	chorismate synthase /// chorismate synthase	-	2e-42	At1g48850	EMB1144 (embryo defective 1144)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	32	PtpAffx.4290.1.S1_a_at	CV258163	chorismate synthase /// chorismate synthase	-	6e-76	At1g48850	EMB1144 (embryo defective 1144)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	32	Ptp.1640.1.S1_at	CX654231	chorismate synthase /// chorismate synthase	-	5e-109	At1g48850	EMB1144 (embryo defective 1144)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e+0	30	PtpAffx.220283.1.S1_at	pmrna36653	hypothetical protein	-	6e+0	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e+0	30	PtpAffx.217991.1.S1_at	pmrna33486	hypothetical protein	-	8e+0	At1g22680	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e+0	30	PtpAffx.218036.1.S1_at	pmrna33548	hypothetical protein	-	7e+0	At5g66580	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	6e+0	30	PtpAffx.216283.1.S1_at	pmrna30950	hypothetical protein	-	3e+0	At3g07760	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-1	34	Arabidopsis thaliana	At1g15350	838104	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	32	Glycine max	PsAffx.CL499Contig1_at	PsAffx.CL499Contig1	-	-	8e+0	At4g08190	Ras-related GTP-binding protein, putative	C.G.	S.X.	Please select
0.04	5e-1	32	Hordeum vulgare	Contig7210_at	Contig7210	-	-	1e+0	At5g19190	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Oryza sativa	Os07g0663900	9635.m04717	-	Short-chain dehydrogenase/reductase SDR familyprotein	2e+0	At5g44450	methyltransferase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	3e-1	34	Triticum aestivum	Ta.25643.1.S1_at	BJ222592	-	-	9e-4	At1g63160	replication factor C 40 kDa, putative	C.G.	S.X.	Please select
0.04	5e+0	28	Vitis vinifera	1617350_at	CB975555	hypothetical protein LOC100243953	-	1e+0	At5g22430	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	30	Zea mays	Zm.18979.1.A1_at	CO535045	-	-	2e-2	At2g31790	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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