Gene omics information

Query gene ID	PtpAffx.218577.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	74.6	PtpAffx.218577.1.S1_s_at	pmrna34240	hypothetical protein	-	3e-1	At5g54531	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.75827.1.A1_s_at	CV255850	hypothetical protein	-	1e-2	At1g62240	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.70832.1.S1_at	BU820372	-	-	4e-23	At3g53090	UPL7	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.161360.1.S1_at	CN524282	hypothetical protein	-	1e-1	Atmg00270	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.126125.1.S1_s_at	AI162512	hypothetical protein	-	2e-12	At1g29260	PEX7	S.X.	H.G.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.221585.1.S1_s_at	pmrna38543	hypothetical protein	-	2e-56	At5g37370	ATSRL1	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	9e-95	345	PtpAffx.218577.1.S1_at	pmrna34240	hypothetical protein	-	3e-1	At5g54531	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	7e-74	276	PtpAffx.210428.1.S1_at	pmrna20480	hypothetical protein	-	8e-17	At3g18350	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	4e-69	260	PtpAffx.212667.1.S1_at	pmrna24780	hypothetical protein	-	3e-19	At3g18350	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-2	38	PtpAffx.201439.1.S1_at	pmrna2840	-	-	2e-5	At5g65950	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	34	PtpAffx.220741.1.S1_at	pmrna37160	hypothetical protein	-	1e+0	At1g45145	ATTRX5	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	34	PtpAffx.220741.1.S1_x_at	pmrna37160	hypothetical protein	-	1e+0	At1g45145	ATTRX5	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	32	PtpAffx.225606.1.S1_at	pmrna45065	hypothetical protein	-	7e-10	At5g60020	LAC17 (laccase 17)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	32	PtpAffx.224171.1.S1_s_at	pmrna42454	-	-	3e-12	At5g60020	LAC17 (laccase 17)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	32	PtpAffx.222676.1.S1_at	pmrna40232	hypothetical protein	-	4e-95	At2g13680	CALS5 (CALLOSE SYNTHASE 5)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-1	34	Arabidopsis thaliana	At5g54531	6241362	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Glycine max	GmaAffx.64035.1.S1_at	BI497646	-	-	7e-12	At4g04540	protein kinase family protein	C.G.	S.X.	Please select
0.04	9e+0	28	Hordeum vulgare	Contig20596_at	Contig20596	-	-	8e-2	At3g13235	ubiquitin family protein	C.G.	S.X.	Please select
0.10	1e-2	40	Oryza sativa	Os09g0447600	9637.m02414	-	-	7e-1	At5g66350	SHI (SHORT INTERNODES)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	32	Triticum aestivum	TaAffx.25135.1.S1_at	CA705797	-	-	3e+0	At3g19055	unknown protein	C.G.	S.X.	Please select
0.05	9e-2	34	Vitis vinifera	1614384_at	CF512271	hypothetical protein LOC100267457	-	3e-4	At5g28150	unknown protein	C.G.	S.X.	Please select
0.06	2e+0	30	Zea mays	Zm.3687.1.A1_at	AW042269	-	-	1e-28	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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