Gene omics information

Query gene ID PtpAffx.218535.1.S1_at
Gene name nramp transporter
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6991.5PtpAffx.218535.1.S1_atpmrna34191nramp transporter-4e-64At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)S.X.H.G.
0.5480.8Ptp.2433.1.S1_s_atCK093521hypothetical protein-3e-2At3g22170FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3)S.X.H.G.
0.4167.7PtpAffx.202894.1.S1_atpmrna5727hypothetical protein-2e-32At1g17440EER4 (ENHANCED ETHYLENE RESPONSE 4)S.X.H.G.
0.4167.7PtpAffx.7350.1.S1_atCK089184hypothetical protein-2e+0At2g34310unknown proteinS.X.H.G.
0.3458.3Ptp.1328.1.S1_atCK093626hypothetical protein-2e+0At5g61750cupin family proteinS.X.H.G.
0.3458.3Ptp.4387.1.S1_atCV227711hypothetical protein-2e-18At2g16940RNA recognition motif (RRM)-containing proteinS.X.H.G.
0.3357.5PtpAffx.204254.1.S1_s_atpmrna8373hypothetical protein-6e-72At2g21270ubiquitin fusion degradation UFD1 family proteinS.X.H.G.
0.3357.5Ptp.2204.1.S1_atCK089785hypothetical protein-1e+1At4g15830bindingS.X.H.G.
0.3255.2PtpAffx.132056.1.A1_s_atDN491976DNA methyltransferase-8e-3At5g14620DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2)S.X.H.G.
0.3153.7PtpAffx.18054.1.A1_atCV263289--1e-1At5g64810WRKY51S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.497.0GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
4.896.4GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
3.995.1GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.494.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
3.393.7GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.992.5GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
2.992.5GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
2.490.4GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
2.188.6GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
2.188.6GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.341e-145517PtpAffx.134269.1.A1_atCV277353--3e-5At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)C.G.S.X.
0.382e-128460PtpAffx.126034.1.S1_atBP922562--6e-27At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)C.G.S.X.
0.462e-36155PtpAffx.202040.1.S1_atpmrna4065nramp transporter-5e-119At1g47240NRAMP2C.G.S.X.
0.083e-22107PtpAffx.71433.2.A1_a_atDN491697nramp transporter-1e-37At1g47240NRAMP2C.G.S.X.
0.013e-138PtpAffx.210214.1.S1_atpmrna20113hypothetical protein-2e-24At5g65770LINC4 (LITTLE NUCLEI4)C.G.S.X.
0.013e-138PtpAffx.209017.1.S1_atpmrna17863--9e-17At1g69020prolyl oligopeptidase family proteinC.G.S.X.
0.011e+036PtpAffx.215609.1.S1_s_atpmrna29900hypothetical protein-9e-19At4g16563aspartyl protease family proteinC.G.S.X.
0.011e+036PtpAffx.205550.1.S1_atpmrna10977nramp transporter-6e-5At1g15960NRAMP6C.G.S.X.
0.011e+036PtpAffx.205550.1.S1_s_atpmrna10977nramp transporter /// nramp transporter-6e-5At1g15960NRAMP6C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.404e-64246Arabidopsis thalianaAt2g23150816847NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.---C.G.S.X.
0.395e-86319Glycine maxGma.470.1.S1_atAY169405.1ferrous ion membrane transport protein DMT1-2e-17At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)C.G.S.X.
0.096e-652Hordeum vulgareContig24105_atContig24105--9e-2At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)C.G.S.X.
0.136e-344Oryza sativaOs12g0581600AK071485.1-Integral membrane protein7e-8At1g47240NRAMP2C.G.S.X.
0.125e-859Triticum aestivumTa.13247.2.S1_a_atCA646751--5e-6At1g47240NRAMP2C.G.S.X.
0.064e-1271Vitis vinifera1617338_atBQ793025hypothetical protein LOC100262579-2e-22At1g47240NRAMP2C.G.S.X.
0.132e-1583Zea maysZm.13647.1.S1_atAY107242.1metal transporter Nramp3-3e-12At5g67330ATNRAMP4C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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