Gene omics information

Query gene ID	PtpAffx.218505.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.218505.1.S1_x_at	pmrna34153	hypothetical protein	-	1e-6	At1g05680	UDP-glucoronosyl/UDP-glucosyl transferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.80954.1.S1_at	BU865987	hypothetical protein	-	2e-11	At5g13210	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.143539.1.S1_at	CX184307	hypothetical protein	-	6e-1	At2g24870	self-incompatibility protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.973.1.A1_at	CK089832	hypothetical protein	-	9e-1	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	Ptp.5130.1.S1_s_at	BU872575	hypothetical protein	-	1e+0	At2g26880	AGL41 (AGAMOUS-LIKE 41)	S.X.	H.G.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.205785.1.S1_at	pmrna11442	hypothetical protein	-	4e-33	At1g27620	transferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.202066.1.S1_at	pmrna4125	hypothetical protein	-	6e-4	At2g26560	PLA2A (PHOSPHOLIPASE A 2A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.215449.1.S1_at	pmrna29652	hypothetical protein	-	4e-1	At4g03620	myosin heavy chain-related	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.2	99.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
22.3	99.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
18.2	99.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.1	98.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.4	82.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.1	78.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.9	74.2	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	0	848	PtpAffx.204328.1.S1_x_at	pmrna8513	hypothetical protein	-	2e-7	At2g43820	UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.50	0	646	PtpAffx.214932.1.S1_s_at	pmrna28859	hypothetical protein	-	1e-8	At2g31750	UGT74D1 (UDP-glucosyl transferase 74D1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.46	3e-180	630	PtpAffx.206895.1.S1_x_at	pmrna13689	hypothetical protein	-	1e-11	At2g43840	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.46	3e-180	630	PtpAffx.206895.1.S1_at	pmrna13689	hypothetical protein	-	1e-11	At2g43840	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	5e-139	494	Ptp.973.1.A1_at	CK089832	hypothetical protein	-	9e-1	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.28	3e-85	315	PtpAffx.206894.1.S1_s_at	pmrna13685	-	-	2e-7	At2g31750	UGT74D1 (UDP-glucosyl transferase 74D1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	3e-85	315	PtpAffx.143539.1.S1_at	CX184307	hypothetical protein	-	6e-1	At2g24870	self-incompatibility protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.61	4e-84	311	PtpAffx.204327.1.S1_s_at	pmrna8512	hypothetical protein	-	6e-1	At5g44345	F-box family protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.60	1e-74	280	PtpAffx.207009.1.S1_x_at	pmrna13884	hypothetical protein	-	2e-7	At2g43840	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	1e-6	54	Arabidopsis thaliana	At1g05680	837075	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	6e-3	42	Glycine max	Gma.2213.1.S1_at	BI970373	-	-	1e-1	At1g05680	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.20	3e-8	57	Hordeum vulgare	HV_CEb0006N04r2_at	HV_CEb0006N04r2	-	-	2e-8	At2g43820	UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2)	C.G.	S.X.	Please select
0.06	5e-1	36	Oryza sativa	Os09g0518200	AK064395.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e-2	At1g22340	AtUGT85A7 (UDP-glucosyl transferase 85A7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-4	46	Triticum aestivum	Ta.8423.1.S1_at	BQ161878	-	-	8e-3	At2g31790	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.24	4e-22	103	Vitis vinifera	1618457_at	CF205125.1	-	-	1e-4	At1g07250	UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4)	C.G.	S.X.	Please select
0.05	4e-1	34	Zea mays	Zm.4160.1.A1_at	CF243936	indole-3-acetate beta-glucosyltransferase	-	1e-2	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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