Gene omics information

Query gene ID	PtpAffx.218468.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.218468.1.S1_at	pmrna34094	hypothetical protein	-	0	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.7721.2.S1_at	BU879383	-	-	5e-31	At5g37370	ATSRL1	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.201300.1.S1_s_at	pmrna2582	hypothetical protein	-	1e-34	At3g13224	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.85760.1.S1_s_at	CX181147	hypothetical protein	-	6e-6	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.53470.1.S1_at	BU879364	hypothetical protein	-	6e-56	At1g12050	fumarylacetoacetase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.21417.1.S1_at	CN520322	hypothetical protein	-	3e-135	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	92.1	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	0	1009	PtpAffx.85760.1.S1_s_at	CX181147	hypothetical protein	-	6e-6	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.57	0	910	PtpAffx.3847.2.A1_at	BP935435	hypothetical protein	-	2e-159	At1g13320	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.42	0	793	PtpAffx.6505.1.A1_s_at	CV238517	hypothetical protein	-	2e-36	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.42	0	793	PtpAffx.6505.1.A1_at	CV238517	-	-	2e-36	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.60	0	741	Ptp.1373.1.S1_s_at	CF235734	hypothetical protein	-	0	At1g13320	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	2e-98	361	Ptp.3096.1.A1_s_at	CV257834	hypothetical protein	-	1e-32	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	1e-9	65	PtpAffx.3847.4.A1_s_at	BU820394	hypothetical protein	-	2e-15	At1g13320	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.2568.2.S1_at	BU812521	hypothetical protein	-	8e-9	At2g22500	UCP5 (UNCOUPLING PROTEIN 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.214952.1.S1_s_at	pmrna28884	hypothetical protein	-	2e-7	At4g12760	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	642	Arabidopsis thaliana	At3g25800	822171	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	one of three genes encoding the protein phosphatase 2A regulatory subunit	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.53	4e-161	569	Glycine max	Gma.6495.1.S1_at	BQ612701	-	-	5e-51	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please select
0.22	1e-35	151	Hordeum vulgare	Contig2937_s_at	Contig2937	-	-	9e-27	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please select
0.42	2e-126	454	Oryza sativa	Os09g0249700	AK069757.1	-	Protein phosphatase 2A A subunit (Phosphatase 2Aregulatory A subunit)	3e-87	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	4e-77	289	Triticum aestivum	Ta.1998.2.S1_a_at	BJ274484	-	-	2e-53	At1g25490	RCN1 (ROOTS CURL IN NPA)	C.G.	S.X.	Please select
0.46	2e-122	438	Vitis vinifera	1612881_at	BQ795786	-	-	4e-35	At1g25490	RCN1 (ROOTS CURL IN NPA)	C.G.	S.X.	Please select
0.45	2e-98	359	Zea mays	Zm.6045.5.A1_at	CK347500	-	-	2e-48	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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