CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.218451.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 PtpAffx.218451.1.S1_s_at pmrna34073 hypothetical protein - 2e+0 At5g66320 zinc finger (GATA type) family protein S.X. H.G.
0.50 78.6 PtpAffx.200604.1.S1_x_at pmrna1188 hypothetical protein - 3e-1 At1g10747 - S.X. H.G.
0.44 71.9 PtpAffx.141052.1.A1_at CV234597 - - 2e+0 At3g24315 AtSec20 S.X. H.G.
0.40 67.0 PtpAffx.223660.1.S1_at pmrna41765 hypothetical protein - 1e-1 At3g44850 protein kinase-related S.X. H.G.
0.27 47.1 PtpAffx.221616.1.S1_at pmrna38589 hypothetical protein - 4e+0 At5g25210 unknown protein S.X. H.G.
0.26 45.2 PtpAffx.218655.1.S1_at pmrna34351 hypothetical protein - 2e+0 At5g58784 dehydrodolichyl diphosphate synthase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.5 99.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
19.3 99.7 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
10.9 99.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 2e-114 410 PtpAffx.225509.1.S1_at pmrna44910 hypothetical protein - 2e-1 At3g48040 ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) C.G. S.X.
0.20 5e-69 260 PtpAffx.224832.1.S1_x_at pmrna43711 hypothetical protein - 2e-1 At1g72660 developmentally regulated GTP-binding protein, putative C.G. S.X.
0.20 5e-69 260 PtpAffx.224832.1.S1_at pmrna43711 hypothetical protein - 2e-1 At1g72660 developmentally regulated GTP-binding protein, putative C.G. S.X.
0.48 2e-12 71 PtpAffx.218452.1.S1_s_at pmrna34074 hypothetical protein - 2e+0 At5g61540 L-asparaginase, putative / L-asparagine amidohydrolase, putative C.G. S.X.
0.48 2e-12 71 PtpAffx.218452.1.S1_at pmrna34074 hypothetical protein - 2e+0 At5g61540 L-asparaginase, putative / L-asparagine amidohydrolase, putative C.G. S.X.
0.05 6e-7 54 PtpAffx.224971.1.S1_at pmrna43928 hypothetical protein - 3e-8 At4g08850 kinase C.G. S.X.
0.14 6e-7 54 PtpAffx.212469.1.S1_at pmrna24430 hypothetical protein - 4e-1 At4g36820 unknown protein C.G. S.X.
0.04 2e-6 52 PtpAffx.225866.1.S1_x_at pmrna45501 hypothetical protein - 8e-2 At1g34110 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.09 9e-6 50 PtpAffx.225649.1.S1_s_at pmrna45139 hypothetical protein - 6e-2 At3g56470 F-box family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 32 Arabidopsis thaliana At5g66320 836764 zinc finger (GATA type) family protein Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate. - - - C.G. S.X.
0.06 1e-1 36 Glycine max GmaAffx.90059.1.S1_at CF805784 - - 2e-2 At2g19330 leucine-rich repeat family protein C.G. S.X.
0.04 3e+0 30 Hordeum vulgare HV04H12r_at HV04H12r - - 4e+0 At5g16650 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.03 7e-1 34 Oryza sativa Os12g0555400 AK061098.1 - Raffinose synthase protein 1e-1 At1g48550 vacuolar protein sorting-associated protein 26 family protein / VPS26 family protein C.G. S.X.
0.07 2e+1 28 Triticum aestivum TaAffx.93343.1.A1_at BJ216150 - - 2e+0 At1g61810 BGLU45 (BETA-GLUCOSIDASE 45) C.G. S.X.
0.06 4e-1 32 Vitis vinifera 1616573_at CD800557 similar to Callose synthase 3 - 5e-14 At1g05570 CALS1 (CALLOSE SYNTHASE 1) C.G. S.X.
0.04 3e+0 30 Zea mays ZmAffx.1060.1.A1_at AI881420 - - 1e-9 At1g51570 C2 domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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