CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.218378.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.218378.1.S1_at pmrna33972 - - 4e-15 At1g58440 XF1 S.X. H.G.
0.01 2.2 PtpAffx.139752.1.S1_at CX171696 hypothetical protein - 1e-13 At1g16860 merozoite surface protein-related S.X. H.G.
0.01 2.2 Ptp.349.1.S1_at CK088507 - - 2e+0 At1g27640 unknown protein S.X. H.G.
0.00 0.4 PtpAffx.141179.1.A1_at CV229041 - - 4e+0 At4g27390 unknown protein S.X. H.G.
0.00 0.4 PtpAffx.69228.1.A1_at CV265498 - - 2e+0 At4g18460 D-Tyr-tRNA(Tyr) deacylase family protein S.X. H.G.
0.00 0.4 Ptp.2560.1.S1_s_at CV270621 hypothetical protein - 1e-65 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.4 99.0 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.8 98.4 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.1 97.6 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.0 97.5 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.9 95.1 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5 94.3 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.85 0 759 PtpAffx.212998.1.S1_s_at pmrna25415 hypothetical protein - 3e-15 At4g37760 SQE3 (squalene epoxidase 3) C.G. S.X.
0.67 6e-178 624 PtpAffx.223145.1.S1_x_at pmrna41002 - - 7e-9 At1g58440 XF1 C.G. S.X.
0.67 6e-178 624 PtpAffx.223145.1.S1_at pmrna41002 - - 7e-9 At1g58440 XF1 C.G. S.X.
0.65 2e-168 593 PtpAffx.218999.1.S1_at pmrna34779 - - 3e-9 At2g22830 SQE2 (squalene epoxidase 2) C.G. S.X.
0.30 2e-76 287 PtpAffx.218996.1.S1_s_at pmrna34774 hypothetical protein - 2e-10 At4g37760 SQE3 (squalene epoxidase 3) C.G. S.X.
0.56 4e-71 270 PtpAffx.221253.1.S1_at pmrna38004 - - 3e-2 At4g37760 SQE3 (squalene epoxidase 3) C.G. S.X.
0.57 4e-71 270 PtpAffx.212999.1.S1_s_at pmrna25418 - - 1e-1 At4g37760 SQE3 (squalene epoxidase 3) C.G. S.X.
0.51 2e-63 244 PtpAffx.218997.1.S1_x_at pmrna34775 hypothetical protein - 2e-12 At4g37760 SQE3 (squalene epoxidase 3) C.G. S.X.
0.28 2e-63 244 PtpAffx.218376.1.S1_x_at pmrna33970 hypothetical protein - 1e-2 At2g22830 SQE2 (squalene epoxidase 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 4e-15 83 Arabidopsis thaliana At1g58440 842213 XF1 Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity. - - - C.G. S.X.
0.22 5e-18 93 Glycine max Gma.6225.1.S1_at CD390358 - - 1e-13 At4g37760 SQE3 (squalene epoxidase 3) C.G. S.X.
0.27 7e-21 101 Hordeum vulgare Contig5809_at Contig5809 - - 2e-14 At1g58440 XF1 C.G. S.X.
0.31 3e-32 141 Oryza sativa Os03g0231800 AK065032.1 - XF1 protein (Squalene monooxygenase, putative) 1e-18 At4g37760 SQE3 (squalene epoxidase 3) C.G. S.X.
0.23 2e-13 77 Triticum aestivum Ta.7591.1.S1_at CD872021 - - 2e-8 At4g37760 SQE3 (squalene epoxidase 3) C.G. S.X.
0.15 7e-20 97 Vitis vinifera 1612781_at CB978740 hypothetical protein LOC100254037 - 2e-2 At4g37760 SQE3 (squalene epoxidase 3) C.G. S.X.
0.25 1e-19 97 Zea mays Zm.7407.2.A1_at CK827055 - - 3e-3 At1g58440 XF1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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