CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.218377.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.218377.1.S1_s_at pmrna33971 hypothetical protein - 9e+0 At5g07475 plastocyanin-like domain-containing protein S.X. H.G.
0.61 87.0 PtpAffx.216532.1.S1_s_at pmrna31368 hypothetical protein - 7e-3 At3g09010 protein kinase family protein S.X. H.G.
0.59 84.9 PtpAffx.211168.1.S1_at pmrna21956 hypothetical protein - 1e-30 At5g54590 protein kinase family protein S.X. H.G.
0.53 80.5 PtpAffx.505.1.A1_at CV243434 hypothetical protein - 2e-1 At2g23090 unknown protein S.X. H.G.
0.48 75.4 PtpAffx.118679.1.S1_s_at CX169245 hypothetical protein - 1e-9 At4g33050 EDA39 (embryo sac development arrest 39) S.X. H.G.
0.47 74.6 PtpAffx.11934.1.S1_at CV130546 hypothetical protein - 1e-21 At4g18950 ankyrin protein kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
45.2 100.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
18.2 99.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0 92.9 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0 92.9 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.4 82.3 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.3 81.0 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.2 79.6 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.1 78.0 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.0 76.2 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.82 3e-68 258 PtpAffx.218377.1.S1_at pmrna33971 hypothetical protein - 9e+0 At5g07475 plastocyanin-like domain-containing protein C.G. S.X.
0.41 2e-38 159 PtpAffx.953.2.A1_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.41 2e-38 159 PtpAffx.953.2.A1_a_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.31 3e-28 125 PtpAffx.953.3.S1_at CA825166 - - 1e+0 At1g74620 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.29 2e-20 99 PtpAffx.218375.1.S1_at pmrna33969 - - 3e-1 At4g29470 phospholipase A2, putative C.G. S.X.
0.29 2e-20 99 PtpAffx.218375.1.S1_x_at pmrna33969 hypothetical protein - 3e-1 At4g29470 phospholipase A2, putative C.G. S.X.
0.08 8e-4 44 PtpAffx.153422.1.A1_at CV257794 - - 2e-1 At3g22240 unknown protein C.G. S.X.
0.04 5e-2 38 PtpAffx.2120.1.S1_at CV259911 - - 8e-5 At4g10265 wound-responsive protein, putative C.G. S.X.
0.03 8e-1 34 PtpAffx.210679.1.S1_at pmrna20941 hypothetical protein - 1e+0 At5g65158 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e+0 30 Arabidopsis thaliana At5g07475 830639 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO - - - C.G. S.X.
0.03 8e-1 34 Glycine max Gma.6333.3.S1_at BE191371 - - 1e-37 At5g61410 RPE C.G. S.X.
0.05 4e+0 30 Hordeum vulgare Contig3732_s_at Contig3732 - - 4e+0 At1g56345 pseudouridine synthase family protein C.G. S.X.
0.04 3e-1 36 Oryza sativa Os06g0256800 9634.m01451 - Conserved hypothetical protein 4e+0 At4g36660 unknown protein C.G. S.X.
0.04 2e-1 36 Triticum aestivum TaAffx.108400.2.S1_at CA688729 - - 4e+0 At2g14500 F-box family protein C.G. S.X.
0.04 1e+1 28 Vitis vinifera 1620728_at CA818747 hypothetical protein LOC100245878 - 2e+0 At4g14104 unknown protein C.G. S.X.
0.03 2e+1 28 Zea mays Zm.8703.1.A1_at BM337839 - - 1e+0 At4g25330 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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